BMR-2012.06.30-10Q

 

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549
______________________________
Form 10-Q

QUARTERLY REPORT
PURSUANT TO SECTION 13 OR 15(d)
OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended June 30, 2012

Commission File Number: 1-32261 (BioMed Realty Trust, Inc.)
000-54089 (BioMed Realty, L.P.)

BIOMED REALTY TRUST, INC.
BIOMED REALTY, L.P.
(Exact name of registrant as specified in its charter)

Maryland
20-1142292 (BioMed Realty Trust, Inc.)
(State or other jurisdiction of
20-1320636 (BioMed Realty, L.P.)
incorporation or organization)
(I.R.S. Employer Identification No.)
 
 
17190 Bernardo Center Drive
 
San Diego, California
92128
(Address of Principal Executive Offices)
(Zip Code)

(858) 485-9840
(Registrant's telephone number, including area code)

Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Exchange Act during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.
BioMed Realty Trust, Inc.
Yes x No o
BioMed Realty, L.P.
Yes x No o
Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§ 232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).
BioMed Realty Trust, Inc.
Yes x No o
BioMed Realty, L.P.
Yes x No o
Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one):




BioMed Realty Trust, Inc.:
Large accelerated filer x
Accelerated filer o
Non-accelerated filer o
Smaller reporting company o
 
 
(Do not check if a smaller reporting company)
 

BioMed Realty, L.P.:
Large accelerated filer o
Accelerated filer o
Non-accelerated filer x
Smaller reporting company o
 
 
(Do not check if a smaller reporting company)
 

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).
BioMed Realty Trust, Inc.
Yes o No x
BioMed Realty, L.P.
Yes o No x

The number of outstanding shares of BioMed Realty Trust, Inc.'s common stock, par value $0.01 per share, as of August 2, 2012 was 154,186,244.

 



Table of Contents


EXPLANATORY NOTE
This report combines the quarterly reports on Form 10-Q for the quarter ended June 30, 2012 of BioMed Realty Trust, Inc., a Maryland corporation, and BioMed Realty, L.P., a Maryland limited partnership of which BioMed Realty Trust, Inc. is the parent company and general partner. Unless otherwise indicated or unless the context requires otherwise, all references in this report to “we,” “us,” “our” or “our company” refer to BioMed Realty Trust, Inc. together with its consolidated subsidiaries, including BioMed Realty, L.P. Unless otherwise indicated or unless the context requires otherwise, all references in this report to “our operating partnership” or “the operating partnership” refer to BioMed Realty, L.P. together with its consolidated subsidiaries.
BioMed Realty Trust, Inc. operates as a real estate investment trust, or REIT, and the general partner of BioMed Realty, L.P. As of June 30, 2012, BioMed Realty Trust, Inc. owned an approximate 98.1% partnership interest and other limited partners, including some of our directors, executive officers and their affiliates, owned the remaining 1.9% partnership interest (including long term incentive plan units) in BioMed Realty, L.P. As the sole general partner of BioMed Realty, L.P., BioMed Realty Trust, Inc. has the full, exclusive and complete responsibility for the operating partnership's day-to-day management and control.

There are a few differences between our company and our operating partnership, which are reflected in the disclosure in this report. We believe it is important to understand the differences between our company and our operating partnership in the context of how BioMed Realty Trust, Inc. and BioMed Realty, L.P. operate as an interrelated consolidated company. BioMed Realty Trust, Inc. is a REIT, whose only material asset is its ownership of partnership interests of BioMed Realty, L.P. As a result, BioMed Realty Trust, Inc. does not conduct business itself, other than acting as the sole general partner of BioMed Realty, L.P., issuing public equity from time to time and guaranteeing certain debt of BioMed Realty, L.P. BioMed Realty Trust, Inc. itself does not hold any indebtedness but guarantees some of the secured and unsecured debt of BioMed Realty, L.P. BioMed Realty, L.P. holds substantially all the assets of the company and holds the ownership interests in the company's joint ventures. BioMed Realty, L.P. conducts the operations of the business and is structured as a partnership with no publicly traded equity. Except for net proceeds from public equity issuances by BioMed Realty Trust, Inc., which are generally contributed to BioMed Realty, L.P. in exchange for partnership units, BioMed Realty, L.P. generates the capital required by the company's business through BioMed Realty, L.P.'s operations, by BioMed Realty, L.P.'s direct or indirect incurrence of indebtedness or through the issuance of partnership units.

Noncontrolling interests and stockholders' equity and partners' capital are the main areas of difference between the consolidated financial statements of BioMed Realty Trust, Inc. and those of BioMed Realty, L.P. The operating partnership and long term incentive plan units in BioMed Realty, L.P. that are not owned by BioMed Realty Trust, Inc. are accounted for as partners' capital in BioMed Realty, L.P.'s financial statements and as noncontrolling interests in BioMed Realty Trust, Inc.'s financial statements. The noncontrolling interests in BioMed Realty, L.P.'s financial statements include the interests of joint venture partners. The noncontrolling interests in BioMed Realty Trust, Inc.'s financial statements include the same noncontrolling interests at the BioMed Realty, L.P. level as well as the limited partnership unitholders of BioMed Realty, L.P., not including BioMed Realty Trust, Inc. The differences between stockholders' equity and partners' capital result from the differences in the equity issued at the BioMed Realty Trust, Inc. and the BioMed Realty, L.P. levels.

We believe combining the quarterly reports on Form 10-Q of BioMed Realty Trust, Inc. and BioMed Realty, L.P. into this single report:

better reflects how management and the analyst community view the business as a single operating unit,

enhances investor understanding of our company by enabling them to view the business as a whole and in the same manner as management,

is more efficient for our company and results in savings in time, effort and expense, and

is more efficient for investors by reducing duplicative disclosure and providing a single document for their review.

To help investors understand the significant differences between our company and our operating partnership, this report presents the following separate sections for each of BioMed Realty Trust, Inc. and BioMed Realty, L.P.:

consolidated financial statements,

the following notes to the consolidated financial statements:


2

Table of Contents

Equity / Partners' Capital,

Debt, and

Earnings Per Share / Unit,

Liquidity and Capital Resources in Management's Discussion and Analysis of Financial Condition and Results of
Operations, and

Unregistered Sales of Equity Securities and Use of Proceeds.

This report also includes separate Item 4. Controls and Procedures sections and separate Exhibit 31 and 32 certifications for each of BioMed Realty Trust, Inc. and BioMed Realty, L.P. in order to establish that the Chief Executive Officer and the Chief Financial Officer of BioMed Realty Trust, Inc. have made the requisite certifications and BioMed Realty Trust, Inc. and BioMed Realty, L.P. are compliant with Rule 13a-15 or Rule 15d-15 of the Securities Exchange Act of 1934 and 18 U.S.C. §1350.




3


BIOMED REALTY TRUST, INC. AND BIOMED REALTY, L.P.

FORM 10-Q - QUARTERLY REPORT
FOR THE QUARTERLY PERIOD ENDED JUNE 30, 2012
TABLE OF CONTENTS
 
 
Page
 
 
 
 
 
 
 
 
 
 
 
 

 
 
 

 
 
 

 
 
 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

4


 
 
 
 
 
 
 
 
Exhibit 31.1
 
Exhibit 31.2
 
Exhibit 32.1
 
 
 


5

Table of Contents

PART I - FINANCIAL INFORMATION

ITEM 1. CONSOLIDATED FINANCIAL STATEMENTS

BIOMED REALTY TRUST, INC.
 
CONSOLIDATED BALANCE SHEETS
(In thousands, except share data)
 
June 30,
2012

December 31,
2011
 
(Unaudited)
 
 
ASSETS
 
 
 
Investments in real estate, net
$
4,309,421

 
$
3,950,246

Investments in unconsolidated partnerships
32,562

 
33,389

Cash and cash equivalents
17,385

 
16,411

Accounts receivable, net
4,241

 
5,141

Accrued straight-line rents, net
139,346

 
130,582

Deferred leasing costs, net
185,354

 
157,255

Other assets
111,383

 
135,521

Total assets
$
4,799,692

 
$
4,428,545

LIABILITIES AND EQUITY
 
 
 
Mortgage notes payable, net
$
550,704

 
$
587,844

Exchangeable senior notes
180,000

 
180,000

Unsecured senior notes, net
893,737

 
645,581

Unsecured senior term loan
400,000

 

Unsecured line of credit
78,000

 
268,000

Accounts payable, accrued expenses and other liabilities
157,829

 
134,924

Total liabilities
2,260,270

 
1,816,349

Equity:
 
 
 
Stockholders' equity:
 
 
 
Preferred stock, $.01 par value, 15,000,000 shares authorized: 7.375% Series A cumulative redeemable preferred stock, $198,000,000 liquidation preference ($25.00 per share), 7,920,000 shares issued and outstanding at June 30, 2012 and December 31, 2011
191,469

 
191,469

Common stock, $.01 par value, 200,000,000 shares authorized, 154,183,744 and 154,101,482 shares issued and outstanding at June 30, 2012 and December 31, 2011, respectively
1,542

 
1,541

Additional paid-in capital
2,776,046

 
2,773,994

Accumulated other comprehensive loss, net
(57,326
)
 
(60,138
)
Dividends in excess of earnings
(381,105
)
 
(304,759
)
Total stockholders' equity
2,530,626

 
2,602,107

Noncontrolling interests
8,796

 
10,089

Total equity
2,539,422

 
2,612,196

Total liabilities and equity
$
4,799,692

 
$
4,428,545


See accompanying notes to consolidated financial statements.

6

Table of Contents

BIOMED REALTY TRUST, INC.

CONSOLIDATED STATEMENTS OF OPERATIONS
(In thousands, except share data)
(Unaudited)

 
For the Three Months Ended
 
For the Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Revenues:
 
 
 
 
 
 
 
Rental
$
95,708

 
$
81,145

 
$
187,183

 
$
161,050

Tenant recoveries
28,939

 
24,723

 
57,390

 
49,264

Other revenue
201

 
541

 
285

 
1,288

Total revenues
124,848

 
106,409

 
244,858

 
211,602

Expenses:
 
 
 
 
 
 
 
Rental operations
37,044

 
31,298

 
73,773


62,371

Depreciation and amortization
47,575

 
35,696

 
92,508


69,447

General and administrative
8,576

 
6,694

 
17,191


14,115

Acquisition-related expenses
12,245

 
334

 
12,879


653

Total expenses
105,440

 
74,022

 
196,351

 
146,586

Income from operations
19,408

 
32,387

 
48,507

 
65,016

Equity in net loss of unconsolidated partnerships
(317
)
 
(466
)
 
(671
)
 
(1,115
)
Interest expense, net
(23,825
)
 
(23,378
)
 
(46,044
)
 
(44,568
)
Other expense
(549
)
 
(691
)
 
(375
)
 
(1,745
)
(Loss) / income from continuing operations
(5,283
)
 
7,852

 
1,417

 
17,588

Income / (loss) from discontinued operations
49

 
95

 
(4,370
)
 
236

Net (loss) / income
(5,234
)
 
7,947

 
(2,953
)
 
17,824

Net loss / (income) attributable to noncontrolling interests
172

 
(68
)
 
201

 
(175
)
Net (loss) / income attributable to the Company
(5,062
)
 
7,879

 
(2,752
)
 
17,649

Preferred stock dividends
(3,651
)
 
(4,241
)
 
(7,301
)
 
(8,481
)
Net (loss) / income available to common stockholders
$
(8,713
)
 
$
3,638

 
$
(10,053
)
 
$
9,168

(Loss) / income from continuing operations per share available to common stockholders:
 
 
 
 
 
 
 
Basic and diluted earnings per share
$
(0.06
)
 
$
0.03

 
$
(0.04
)
 
$
0.07

(Loss) / income from discontinued operations per share available to common stockholders:
 
 
 
 
 
 
 
Basic and diluted earnings per share
$

 
$

 
$
(0.03
)
 
$

Net (loss) / income per share available to common stockholders:
 
 
 
 
 
 
 
Basic and diluted earnings per share
$
(0.06
)
 
$
0.03

 
$
(0.07
)
 
$
0.07

Weighted-average common shares outstanding:
 
 
 
 
 
 
 
Basic
152,775,422

 
129,858,098

 
152,715,715

 
129,815,154

Diluted
152,775,422

 
132,840,932

 
152,715,715

 
132,803,097


See accompanying notes to consolidated financial statements.


7

Table of Contents

BIOMED REALTY TRUST, INC.

CONSOLIDATED STATEMENTS OF COMPREHENSIVE (LOSS) / INCOME
(In thousands)
(Unaudited)

 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Net (loss) / income
$
(5,234
)
 
$
7,947

 
$
(2,953
)
 
$
17,824

Other comprehensive income:
 
 
 
 
 
 
 
Foreign currency translation adjustments
2,991

 

 
2,991

 

Unrealized (loss) / gain on derivative instruments, net
(3,372
)
 
864

 
(3,597
)
 
3,409

Amortization of deferred interest costs
1,736

 
1,760

 
3,479

 
3,525

Reclassification on unrealized loss on equity securities
545

 
825

 
545

 
825

Reclassification on sale of equity securities
(60
)
 

 
(32
)
 

Unrealized loss on equity securities
(254
)
 
(1,375
)
 
(519
)
 
(3,692
)
Total other comprehensive income
1,586

 
2,074

 
2,867

 
4,067

Comprehensive (loss) / income
(3,648
)
 
10,021

 
(86
)
 
21,891

Comprehensive loss / (income) attributable to noncontrolling interests
141

 
(114
)
 
146

 
(265
)
Comprehensive (loss) / income attributable to the Company
$
(3,507
)
 
$
9,907

 
$
60

 
$
21,626


See accompanying notes to consolidated financial statements.

8

Table of Contents

BIOMED REALTY TRUST, INC.

CONSOLIDATED STATEMENT OF EQUITY
(In thousands, except share data)
(Unaudited)

 
Series A Preferred Stock
 
Common Stock
 
Additional Paid-In Capital
 
Accumulated Other Comprehensive Loss, net
 
Dividends in Excess of Earnings
 
Total Stockholders' Equity
 
Noncontrolling Interests
 
Total Equity
 
 
Shares
 
Amount
 
Balance at December 31, 2011
$
191,469

 
154,101,482

 
$
1,541

 
$
2,773,994

 
$
(60,138
)
 
$
(304,759
)
 
$
2,602,107

 
$
10,089

 
$
2,612,196

Net issuances of unvested restricted common stock

 
45,041

 

 
(3,401
)
 

 

 
(3,401
)
 

 
(3,401
)
Conversion of OP units to common stock

 
37,221

 
1

 
30

 

 

 
31

 
(31
)
 

Vesting of share-based awards

 

 

 
5,576

 

 

 
5,576

 

 
5,576

Reallocation of equity to noncontrolling interests

 

 

 
(153
)
 

 

 
(153
)
 
153

 

Common stock dividends

 

 

 

 

 
(66,293
)
 
(66,293
)
 

 
(66,293
)
OP unit distributions

 

 

 

 

 

 

 
(1,269
)
 
(1,269
)
Net loss

 

 

 

 

 
(2,752
)
 
(2,752
)
 
(201
)
 
(2,953
)
Preferred stock dividends

 

 

 

 

 
(7,301
)
 
(7,301
)
 

 
(7,301
)
Foreign currency translation adjustment

 

 

 

 
2,935

 

 
2,935

 
56

 
2,991

Reclassification on other-than-temporary impairment of marketable securities

 

 

 

 
535

 

 
535

 
10

 
545

Reclassification on sale of marketable securities

 

 

 

 
(32
)
 

 
(32
)
 

 
(32
)
Unrealized loss on equity securities

 

 

 

 
(509
)
 

 
(509
)
 
(10
)
 
(519
)
Amortization of deferred interest costs

 

 

 

 
3,413

 

 
3,413

 
66

 
3,479

Unrealized loss on derivative instruments, net

 

 

 

 
(3,530
)
 

 
(3,530
)
 
(67
)
 
(3,597
)
Balance at June 30, 2012
$
191,469

 
154,183,744

 
$
1,542

 
$
2,776,046

 
$
(57,326
)
 
$
(381,105
)
 
$
2,530,626

 
$
8,796

 
$
2,539,422


See accompanying notes to consolidated financial statements.


9

Table of Contents

BIOMED REALTY TRUST, INC.

CONSOLIDATED STATEMENTS OF CASH FLOWS
(In thousands)
(Unaudited)

 
Six Months Ended
 
June 30,
 
2012
 
2011
 
 
 
 
Operating activities:
 
 
 
Net (loss) / income
$
(2,953
)
 
$
17,824

Adjustments to reconcile net income to net cash provided by operating activities:
 
 
 
Depreciation and amortization
92,600

 
69,625

Allowance for doubtful accounts
833

 
931

Non-cash revenue adjustments
6,349

 
5,145

Other non-cash adjustments
11,862

 
6,621

Compensation expense related to restricted common stock and LTIP units
5,575

 
3,656

Distributions representing a return on capital from unconsolidated partnerships
1,088

 
816

Changes in operating assets and liabilities:
 
 
 
Accounts receivable
1,004

 
2,715

Accrued straight-line rents
(9,934
)
 
(10,249
)
Deferred leasing costs
(6,587
)
 
(9,402
)
Other assets
6,038

 
524

Accounts payable, accrued expenses and other liabilities
2,243

 
(6,434
)
Net cash provided by operating activities
108,118

 
81,772

Investing activities:
 
 
 
Purchases of investments in real estate and related intangible assets
(365,751
)
 
(38,981
)
Capital expenditures
(79,703
)
 
(81,537
)
Contributions to unconsolidated partnerships, net
(1,350
)
 

Purchases of debt and equity securities
(3,258
)
 
(2,050
)
Proceeds from the sale of equity securities
110

 

Deposits to escrow for acquisitions
(1,000
)
 

Net cash used in investing activities
(450,952
)
 
(122,568
)
Financing activities:
 
 
 
Payment of deferred loan costs
(5,022
)
 
(3,466
)
Unsecured line of credit proceeds
498,000

 
145,475

Unsecured line of credit payments
(688,000
)
 
(416,725
)
Principal payments on mortgage notes payable
(36,557
)
 
(33,268
)
Proceeds from unsecured senior term loan
400,000

 

Proceeds from unsecured senior notes
247,815

 
397,460

Distributions to operating partnership unit and LTIP unit holders
(1,232
)
 
(1,107
)
Dividends paid to common stockholders
(63,965
)
 
(48,526
)
Dividends paid to preferred stockholders
(7,301
)
 
(8,481
)
Net cash provided by financing activities
343,738

 
31,362

Effect of exchange rate changes on cash and cash equivalents
70

 

Net increase / (decrease) in cash and cash equivalents
974

 
(9,434
)
Cash and cash equivalents at beginning of period
16,411

 
21,467

Cash and cash equivalents at end of period
$
17,385

 
$
12,033


10

Table of Contents

 
Six Months Ended
 
June 30,
 
2012
 
2011
 
 
 
 
Supplemental disclosure of cash flow information:
 
 
 
Cash paid during the period for interest (net of amounts capitalized of $4,450 and $3,311, respectively)
$
34,289

 
$
35,927

Supplemental disclosure of non-cash investing and financing activities:
 
 
 
Accrual for preferred stock dividends declared
$
3,651

 
$
4,241

Accrual for common stock dividends declared
33,149

 
26,252

Accrual for distributions declared for operating partnership unit and LTIP unit holders
633

 
596

Accrued additions to real estate and related intangible assets
30,104

 
24,891

Deposits applied for acquisitions
18,649

 
1,800


See accompanying notes to consolidated financial statements.


11

Table of Contents

BIOMED REALTY, L.P.

CONSOLIDATED BALANCE SHEETS
(In thousands, except unit data)

 
June 30,
2012
 
December 31,
2011
 
(Unaudited)
 
 
ASSETS
 
 
 
Investments in real estate, net
$
4,309,421

 
$
3,950,246

Investments in unconsolidated partnerships
32,562

 
33,389

Cash and cash equivalents
17,385

 
16,411

Accounts receivable, net
4,241

 
5,141

Accrued straight-line rents, net
139,346

 
130,582

Deferred leasing costs, net
185,354

 
157,255

Other assets
111,383

 
135,521

Total assets
$
4,799,692

 
$
4,428,545

LIABILITIES AND CAPITAL
 
 
 
Mortgage notes payable, net
$
550,704

 
$
587,844

Exchangeable senior notes
180,000

 
180,000

Unsecured senior notes, net
893,737

 
645,581

Unsecured senior term loan
400,000

 

Unsecured line of credit
78,000

 
268,000

Accounts payable, accrued expenses and other liabilities
157,829

 
134,924

Total liabilities
2,260,270

 
1,816,349

Capital:
 
 
 
Partners' capital:
 
 
 
Preferred units, 7.375% Series A cumulative redeemable preferred units, $198,000,000 liquidation preference ($25.00 per unit), 7,920,000 units issued and outstanding at June 30, 2012 and December 31, 2011
191,469

 
191,469

Limited partners' capital, 2,942,758 and 2,979,979 units issued and outstanding at June 30, 2012 and December 31, 2011, respectively
9,049

 
10,332

General partner's capital, 154,183,744 and 154,101,482 units issued and outstanding at June 30, 2012 and December 31, 2011, respectively
2,394,884

 
2,469,233

Accumulated other comprehensive loss
(55,727
)
 
(58,594
)
Total partners' capital
2,539,675

 
2,612,440

Noncontrolling interests deficit
(253
)
 
(244
)
Total capital
2,539,422

 
2,612,196

Total liabilities and capital
$
4,799,692

 
$
4,428,545


See accompanying notes to consolidated financial statements.

12

Table of Contents

BIOMED REALTY, L.P.

CONSOLIDATED STATEMENTS OF OPERATIONS
(In thousands, except unit data)
(Unaudited)

 
For the Three Months Ended
 
For the Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Revenues:
 
 
 
 
 
 
 
Rental
$
95,708

 
$
81,145

 
$
187,183

 
$
161,050

Tenant recoveries
28,939

 
24,723

 
57,390

 
49,264

Other revenue
201

 
541

 
285

 
1,288

Total revenues
124,848

 
106,409

 
244,858

 
211,602

Expenses:
 
 
 
 
 
 
 
Rental operations
37,044

 
31,298

 
73,773

 
62,371

Depreciation and amortization
47,575

 
35,696

 
92,508

 
69,447

General and administrative
8,576

 
6,694

 
17,191

 
14,115

Acquisition-related expenses
12,245

 
334

 
12,879

 
653

Total expenses
105,440

 
74,022

 
196,351

 
146,586

Income from operations
19,408

 
32,387

 
48,507

 
65,016

Equity in net loss of unconsolidated partnerships
(317
)
 
(466
)
 
(671
)
 
(1,115
)
Interest expense, net
(23,825
)
 
(23,378
)
 
(46,044
)
 
(44,568
)
Other expense
(549
)
 
(691
)
 
(375
)
 
(1,745
)
(Loss) / income from continuing operations
(5,283
)
 
7,852

 
1,417

 
17,588

Income / (loss) from discontinued operations
49

 
95

 
(4,370
)
 
236

Net (loss) / income
(5,234
)
 
7,947

 
(2,953
)
 
17,824

Net loss attributable to noncontrolling interests
6

 
14

 
9

 
32

Net (loss) / income attributable to the Operating Partnership
(5,228
)
 
7,961

 
(2,944
)
 
17,856

Preferred unit distributions
(3,651
)
 
(4,241
)
 
(7,301
)
 
(8,481
)
Net (loss) / income available to unitholders
$
(8,879
)
 
$
3,720

 
$
(10,245
)
 
$
9,375

(Loss) / income from continuing operations per unit available to common unitholders:
 
 
 
 
 
 
 
Basic and diluted earnings per unit
$
(0.06
)
 
$
0.03

 
$
(0.04
)
 
$
0.07

(Loss) / income from discontinued operations per unit available to common unitholders:
 
 
 
 
 
 
 
Basic and diluted earnings per unit
$

 
$

 
$
(0.03
)
 
$

Net (loss) / income per unit available to common unitholders:
 
 
 
 
 
 
 
Basic and diluted earnings per unit
$
(0.06
)
 
$
0.03

 
$
(0.07
)
 
$
0.07

Weighted-average units outstanding:
 
 
 
 
 
 
 
Basic
155,694,169

 
132,782,072

 
155,641,727

 
132,742,123

Diluted
155,694,169

 
132,782,072

 
155,641,727

 
132,742,123


See accompanying notes to consolidated financial statements.

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BIOMED REALTY, L.P.

CONSOLIDATED STATEMENTS OF COMPREHENSIVE (LOSS) / INCOME
(In thousands)
(Unaudited)

 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Net (loss) / income
$
(5,234
)
 
$
7,947

 
$
(2,953
)
 
$
17,824

Other comprehensive income:
 
 
 
 
 
 
 
Foreign currency translation adjustments
2,991

 

 
2,991

 

Unrealized (loss) / gain on derivative instruments, net
(3,372
)
 
864

 
(3,597
)
 
3,409

Amortization of deferred interest costs
1,736

 
1,760

 
3,479

 
3,525

Reclassification on unrealized loss on equity securities
545

 
825

 
545

 
825

Reclassification on sale of equity securities
(60
)
 

 
(32
)
 

Unrealized loss on equity securities
(254
)
 
(1,375
)
 
(519
)
 
(3,692
)
Total other comprehensive income
1,586

 
2,074

 
2,867

 
4,067

Comprehensive (loss) / income
(3,648
)
 
10,021

 
(86
)
 
21,891

Comprehensive loss attributable to noncontrolling interests
6

 
14

 
9

 
32

Comprehensive (loss) / income attributable to the Operating Partnership
$
(3,642
)
 
$
10,035

 
$
(77
)
 
$
21,923


See accompanying notes to consolidated financial statements.

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BIOMED REALTY, L.P.

CONSOLIDATED STATEMENT OF CAPITAL
(In thousands, except unit data)
(Unaudited)

 
Preferred Series A
 
Limited Partners' Capital
 
General Partner's Capital
 
Accumulated Other Comprehensive Loss
 
Total Partner's Capital
 
Noncontrolling Interests Deficit
 
Total Capital
 
Units
 
Amount
 
Units
 
Amount
 
Units
 
Amount
 
Balance at December 31, 2011
7,920,000

 
$
191,469

 
2,979,979

 
$
10,332

 
154,101,482

 
$
2,469,233

 
$
(58,594
)
 
$
2,612,440

 
$
(244
)
 
$
2,612,196

Net issuances of unvested restricted OP units

 

 

 

 
45,041

 
(3,401
)
 

 
(3,401
)
 

 
(3,401
)
Conversion of OP units

 

 
(37,221
)
 
(31
)
 
37,221

 
31

 

 

 

 

Vesting of share-based awards

 

 

 

 

 
5,576

 

 
5,576

 

 
5,576

Reallocation of equity to limited partners

 

 

 
209

 

 
(209
)
 

 

 

 

Distributions

 
(7,301
)
 

 
(1,269
)
 

 
(66,293
)
 

 
(74,863
)
 

 
(74,863
)
Net income / (loss)

 
7,301

 

 
(192
)
 

 
(10,053
)
 

 
(2,944
)
 
(9
)
 
(2,953
)
Foreign currency translation adjustment

 

 

 

 

 

 
2,991

 
2,991

 

 
2,991

Reclassification on other-than-temporary impairment of marketable securities

 

 

 

 

 

 
545

 
545

 

 
545

Reclassification on sale of marketable securities

 

 

 

 

 

 
(32
)
 
(32
)
 

 
(32
)
Unrealized loss on equity securities

 

 

 

 

 

 
(519
)
 
(519
)
 

 
(519
)
Amortization of deferred interest costs

 

 

 

 

 

 
3,479

 
3,479

 

 
3,479

Unrealized loss on derivative instruments, net

 

 

 

 

 

 
(3,597
)
 
(3,597
)
 

 
(3,597
)
Balance at June 30, 2012
7,920,000

 
$
191,469

 
2,942,758

 
$
9,049

 
154,183,744

 
$
2,394,884

 
$
(55,727
)
 
$
2,539,675

 
$
(253
)
 
$
2,539,422


See accompanying notes to consolidated financial statements.

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BIOMED REALTY, L.P.

CONSOLIDATED STATEMENTS OF CASH FLOWS
(In thousands)
(Unaudited)

 
Six Months Ended
 
June 30,
 
2012
 
2011
 
 
 
 
Operating activities:
 
 
 
Net (loss) / income
$
(2,953
)
 
$
17,824

Adjustments to reconcile net income to net cash provided by operating activities:
 
 
 
Depreciation and amortization
92,600

 
69,625

Allowance for doubtful accounts
833

 
931

Non-cash revenue adjustments
6,349

 
5,145

Other non-cash adjustments
11,862

 
6,621

Compensation expense related to share-based payments
5,575

 
3,656

Distributions representing a return on capital from unconsolidated partnerships
1,088

 
816

Changes in operating assets and liabilities:
 
 
 
Accounts receivable
1,004

 
2,715

Accrued straight-line rents
(9,934
)
 
(10,249
)
Deferred leasing costs
(6,587
)
 
(9,402
)
Other assets
6,038

 
524

Accounts payable, accrued expenses and other liabilities
2,243

 
(6,434
)
Net cash provided by operating activities
108,118

 
81,772

Investing activities:
 
 
 
Purchases of investments in real estate and related intangible assets
(365,751
)
 
(38,981
)
Capital expenditures
(79,703
)
 
(81,537
)
Contributions to unconsolidated partnerships, net
(1,350
)
 

Purchases of debt and equity securities
(3,258
)
 
(2,050
)
Proceeds from the sale of equity securities
110

 

Deposits to escrow for acquisitions
(1,000
)
 

Net cash used in investing activities
(450,952
)
 
(122,568
)
Financing activities:
 
 
 
Payment of deferred loan costs
(5,022
)
 
(3,466
)
Unsecured line of credit proceeds
498,000

 
145,475

Unsecured line of credit payments
(688,000
)
 
(416,725
)
Principal payments on mortgage notes payable
(36,557
)
 
(33,268
)
Proceeds from unsecured senior term loan
400,000

 

Proceeds from unsecured senior notes
247,815

 
397,460

Distributions paid to unitholders
(65,197
)
 
(49,633
)
Distributions paid to preferred unitholders
(7,301
)
 
(8,481
)
Net cash provided by financing activities
343,738

 
31,362

Effect of exchange rate changes on cash and cash equivalents
70

 

Net increase / (decrease) in cash and cash equivalents
974

 
(9,434
)
Cash and cash equivalents at beginning of period
16,411

 
21,467


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Six Months Ended
 
June 30,
 
2012
 
2011
 
 
 
 
Cash and cash equivalents at end of period
$
17,385

 
$
12,033

Supplemental disclosure of cash flow information:
 
 
 
Cash paid during the period for interest (net of amounts capitalized of $4,450 and $3,311, respectively)
$
34,289

 
$
35,927

Supplemental disclosure of non-cash investing and financing activities:
 
 
 
Accrual for unit distributions declared
$
33,782

 
$
26,848

Accrual for preferred unit distributions declared
3,651

 
4,241

Accrued additions to real estate and related intangible assets
30,104

 
24,891

Deposits applied for acquisitions
18,649

 
1,800


See accompanying notes to consolidated financial statements.


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BIOMED REALTY TRUST, INC.
BIOMED REALTY, L.P.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
(Unaudited)

1. Organization of the Parent Company and Description of Business

BioMed Realty Trust, Inc., a Maryland corporation (the “Parent Company”), operates as a fully integrated, self-administered and self-managed real estate investment trust (“REIT”) focused on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry principally through its subsidiary, BioMed Realty, L.P., a Maryland limited partnership (the “Operating Partnership” and together with the Parent Company referred to as the “Company”). The Company's tenants primarily include biotechnology and pharmaceutical companies, scientific research institutions, government agencies and other entities involved in the life science industry. The Company's properties are generally located in markets with well-established reputations as centers for scientific research, including Boston, San Francisco, San Diego, Maryland, New York/New Jersey, Pennsylvania and Seattle.

The Parent Company is the sole general partner of the Operating Partnership and, as of June 30, 2012, owned a 98.1% interest in the Operating Partnership. The remaining 1.9% interest in the Operating Partnership is held by limited partners. Each partner's percentage interest in the Operating Partnership is determined based on the number of operating partnership units and long-term incentive plan units (“LTIP units” and together with the operating partnership units, the “OP units”) owned as compared to total OP units (and potentially issuable OP units, as applicable) outstanding as of each period end and is used as the basis for the allocation of net income or loss to each partner.

2. Basis of Presentation and Summary of Significant Accounting Policies

The accompanying interim financial statements are unaudited, but have been prepared in accordance with U.S. generally accepted accounting principles (“GAAP”) for interim financial information and in conjunction with the rules and regulations of the Securities and Exchange Commission. Accordingly, they do not include all the disclosures required by GAAP for complete financial statements. In the opinion of management, all adjustments and eliminations, consisting of normal recurring adjustments necessary for a fair presentation of the financial statements for these interim periods have been recorded. These financial statements should be read in conjunction with the audited consolidated financial statements and notes therein included in the Company's annual report on Form 10-K for the year ended December 31, 2011.

Principles of Consolidation

The consolidated financial statements include the accounts of the Company, its wholly owned subsidiaries, partnerships and limited liability companies it controls, and variable interest entities for which the Company has determined itself to be the primary beneficiary. All material intercompany transactions and balances have been eliminated. The Company consolidates entities the Company controls and records a noncontrolling interest for the portions not owned by the Company. Control is determined, where applicable, by the sufficiency of equity invested and the rights of the equity holders, and by the ownership of a majority of the voting interests, with consideration given to the existence of approval or veto rights granted to the minority stockholder. If the minority stockholder holds substantive participating rights, it overcomes the presumption of control by the majority voting interest holder. In contrast, if the minority stockholder simply holds protective rights (such as consent rights over certain actions), it does not overcome the presumption of control by the majority voting interest holder.

Assets and liabilities of subsidiaries outside the United States with non-U.S. dollar functional currencies are translated into U.S. dollars using exchange rates as of the balance sheet dates. Income and expenses are translated using the average exchange rates for the reporting period. Foreign currency translation adjustments are recorded as a component of other comprehensive income. For the three and six months ended June 30, 2012, total revenues from properties outside the United States were $901,000, which represented less than 1% of the Company's total revenues for both the three and six months ended June 30, 2012. The Company's net investment in properties outside the United States was $205.9 million as of June 30, 2012.

Investments in Partnerships and Limited Liability Companies

The Company has determined that it is the primary beneficiary in six variable interest entities, or VIEs, consisting of single-tenant properties in which the tenant has a fixed-price purchase option, which are consolidated and reflected in the accompanying consolidated financial statements. Selected financial data of the VIEs at June 30, 2012 and December 31, 2011

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consist of the following (in thousands):
 
June 30,
2012
 
December 31,
2011
Investment in real estate, net
$
403,588

 
$
409,327

Total assets
437,109

 
454,208

Total debt
145,748

 
146,581

Total liabilities
150,369

 
151,893


Investments in Real Estate, Net

Investments in real estate, net consisted of the following (in thousands):
 
June 30,
2012
 
December 31,
2011
Land
$
699,268

 
$
591,009

Land under development
46,969

 
56,008

Buildings and improvements
3,972,914

 
3,615,678

Construction in progress
113,024

 
140,025

 
4,832,175

 
4,402,720

Accumulated depreciation
(522,754
)
 
(452,474
)
 
$
4,309,421

 
$
3,950,246


Impairment of Long-Lived Assets and Long-Lived Assets to be Disposed

The Company reviews long-lived assets and certain identifiable intangibles for impairment whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. The review of recoverability is based on an estimate of the future undiscounted cash flows (excluding interest charges) expected to result from the long-lived asset's use and eventual disposition. These cash flows consider factors such as expected future operating income, trends and prospects, as well as the effects of leasing demand, competition and other factors. If impairment exists due to the inability to recover the carrying value of a long-lived asset, an impairment loss is recorded to the extent that the carrying value exceeds the estimated fair-value of the property. The Company is required to make subjective assessments as to whether there are impairments in the values of its investments in long-lived assets. These assessments have a direct impact on the Company's net income because recording an impairment loss results in an immediate negative adjustment to net income. The evaluation of anticipated cash flows is highly subjective and is based in part on assumptions regarding future occupancy, rental rates and capital requirements that could differ materially from actual results in future periods. Although the Company's strategy is to hold its properties over the long-term, if the Company's strategy changes or market conditions otherwise dictate an earlier sale date, an impairment loss may be recognized to reduce the property to the lower of the carrying amount or fair-value, and such loss could be material.

In April 2012, the Company completed the exchange of a property for another real estate operating property. As a result, the property disposed of was reclassified as a discontinued operation. This property was written down to its estimated fair-value of $28.0 million, less costs to sell, which resulted in an impairment loss of $4.6 million that is included in loss from discontinued operations for the six months ended June 30, 2012. The parties to the exchange determined and agreed upon the fair-value of the property received in the transaction, which the Company considers to be a level 2 input in the fair-value hierarchy. See Note 12 for discussion of discontinued operations.
 
Deferred Leasing Costs, Net

Deferred leasing costs, net at June 30, 2012 consisted of the following (in thousands):
 
Balance at
 
Accumulated
 
 
 
June 30, 2012
 
Amortization
 
Net
Acquired in-place leases
$
299,607

 
$
(166,328
)
 
$
133,279

Acquired management agreements
24,957

 
(13,851
)
 
11,106

Deferred leasing and other direct costs
61,083

 
(20,114
)
 
40,969

 
$
385,647

 
$
(200,293
)
 
$
185,354



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Deferred leasing costs, net at December 31, 2011 consisted of the following (in thousands):
 
Balance at
 
Accumulated
 
 
 
December 31, 2011
 
Amortization
 
Net
Acquired in-place leases
$
260,552

 
$
(150,453
)
 
$
110,099

Acquired management agreements
22,696

 
(12,641
)
 
10,055

Deferred leasing and other direct costs
54,461

 
(17,360
)
 
37,101

 
$
337,709

 
$
(180,454
)
 
$
157,255


Investments

Investments in equity securities, which are included in other assets on the accompanying consolidated balance sheets, consisted of the following (in thousands):
 
June 30,
2012
 
December 31,
2011
Available-for-sale securities, historical cost
$
5,390

 
$
5,585

Other-than-temporary unrealized loss
(5,083
)
 
(4,595
)
Unrealized loss
(8
)
 
(2
)
Available-for-sale securities, fair-value(1)
299

 
988

Privately-held securities, cost basis
7,220

 
4,245

Total equity securities
$
7,519

 
$
5,233

____________
(1)
Determination of fair-value is classified as Level 1 in the fair-value hierarchy based on the use of quoted prices in active markets.

The Company holds investments in available-for-sale securities of two publicly traded companies. During the six months ended June 30, 2012, the Company reclassified to other expense from accumulated other comprehensive loss, an unrealized loss, considered to be other-than-temporary, of approximately $545,000, relating to its investment in securities of one of these companies. Management has the intent and ability to retain the investment in the other company for a period of time sufficient to allow for an anticipated recovery in its market value. Management will continue to periodically evaluate whether any investment, the fair-value of which is less than the Company's cost basis, should be considered other-than-temporarily-impaired. If other-than-temporary impairment is considered to exist, the related unrealized loss will be reclassified from accumulated other comprehensive loss and recorded as a reduction of net income.

The Company's remaining investments consisted of securities in privately-held companies or funds, which are recorded at cost basis due to the Company's lack of control or significant influence over such companies or funds. The Company owned equity securities of four privately-held companies and two privately-held funds during the six months ended June 30, 2012. There were no identified events or changes in circumstances that may have a significant adverse effect on the carrying value of the Company's cost basis investments and therefore, no evaluation of impairment was performed during the six months ended June 30, 2012 on the Company's cost basis investments.

Construction Loan Receivable

During the six months ended June 30, 2012, the Company entered into an agreement to purchase a $255 million interest in a $355 million construction loan secured by first priority mortgages on a 1.1 million square foot laboratory, office and retail development project located in Boston, Massachusetts, which is 95% leased to Vertex Pharmaceuticals Incorporated to serve as its new corporate headquarters.

The construction loan matures on September 30, 2014, with two one-year extension options exercisable at the borrower's election after paying the lenders an extension fee on the then-outstanding principal amount. The construction loan bears interest on the outstanding principal amount at a floating rate equal to the greater of (1) reserve adjusted LIBOR plus 550 basis points and (2) 6.5%. In addition, the borrower is required to pay a fee to the lenders based on a specified percentage of the average daily unfunded amount of the construction loan. The borrower may prepay the construction loan in part under certain circumstances, and may prepay the construction loan in full with prior notice and a prepayment fee to the lenders. The Company expects initial draws on the construction loan to be funded in the fourth quarter of 2012 and to be fully invested in

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Table of Contents

early 2014.

Management's Estimates

Management has made a number of estimates and assumptions relating to the reporting of assets and liabilities and the disclosure of contingent assets and liabilities at the date of the consolidated financial statements and the reporting of revenue and expenses during the reporting period to prepare these consolidated financial statements in conformity with GAAP. The Company bases its estimates on historical experience and on various other assumptions that are believed to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities and reported amounts of revenue and expenses that are not readily apparent from other sources. Actual results could differ from those estimates under different assumptions or conditions.

3. Equity of the Parent Company

During the six months ended June 30, 2012, the Parent Company issued restricted stock awards to the Company's employees and directors totaling 227,411 and 16,695 shares of common stock, respectively (180,594 shares of common stock were surrendered to the Company and subsequently retired in lieu of cash payments for taxes due on the vesting of restricted stock and 18,471 shares were forfeited during the same period), which are included in the total of common stock outstanding as of the period end.

During the six months ended June 30, 2012, the Parent Company awarded 408,888 performance units (the “Performance Units”) to certain of its executive officers, which represent the maximum number of Performance Units that may vest. Each Performance Unit represents a contingent right to receive one share of the Parent Company's common stock if vesting conditions are satisfied. Performance Units vest ratably over one, two and three year periods (each, a “Performance Period”) based upon the Parent Company's total stockholder return relative to its peer group. The grant date fair-value of the Performance Units was estimated using a Monte Carlo simulation which considered the likelihood of achieving the vesting conditions. The grant date fair-value of these awards of approximately $3.3 million will be recognized as compensation expense on a straight-line basis over each respective Performance Period. The total compensation to be expensed in future periods as of June 30, 2012 was $2.4 million over a weighted-average of approximately 1.7 years. No dividends will be paid or accrued on the Performance Units, and shares of the Parent Company's common stock will not be issued until vesting of the Performance Units occurs.

Common Stock, Operating Partnership Units and LTIP Units

As of June 30, 2012, the Company had outstanding 154,183,744 shares of the Parent Company's common stock and 2,579,788 and 362,970 operating partnership and LTIP units, respectively. A share of the Parent Company's common stock and the operating partnership and LTIP units have essentially the same economic characteristics as they share equally in the total net income or loss and distributions of the Operating Partnership.

Dividends and Distributions

The following table lists the dividends and distributions declared by the Parent Company and the Operating Partnership during the six months ended June 30, 2012:

Declaration Date
 
Securities Class
 
Amount Per
Share/Unit
 
Period Covered
 
Dividend and
Distribution
Payable Date
 
Dividend and
Distribution Amount
 
 
 
 
 
 
 
 
 
 
(In thousands)
March 15, 2012
 
 Common stock and OP units
 
$
0.21500

 
 January 1, 2012 to March 31, 2012
 
April 16, 2012
 
$
33,780

March 15, 2012
 
 Series A preferred stock/units
 
$
0.46094

 
 January 16, 2012 to April 15, 2012
 
April 16, 2012
 
$
3,650

June 15, 2012
 
 Common stock and OP units
 
$
0.21500

 
 April 1, 2012 to June 30, 2012
 
July 16, 2012
 
$
33,782

June 15, 2012
 
 Series A preferred stock/units
 
$
0.46094

 
 April 16, 2012 to July 15, 2012
 
July 16, 2012
 
$
3,651


Total 2012 dividends and distributions declared through June 30, 2012 (in thousands):

Common stock and OP units
$
67,562

Series A preferred stock/units
7,301

 
$
74,863


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Table of Contents


Noncontrolling Interests

Noncontrolling interests on the consolidated balance sheets of the Parent Company relate primarily to the OP units in the Operating Partnership that are not owned by the Parent Company. With respect to the noncontrolling interests in the Operating Partnership, noncontrolling interests with redemption provisions that permit the issuer to settle in either cash or common stock at the option of the issuer are further evaluated to determine whether temporary or permanent equity classification on the balance sheet is appropriate. Because the OP units comprising the noncontrolling interests contain such a provision, the Company evaluated this guidance, including the requirement to settle in unregistered shares, and determined that the OP units meet the requirements to qualify for presentation as permanent equity.

The Company evaluates individual redeemable noncontrolling interests for the ability to continue to recognize the noncontrolling interest as permanent equity in the consolidated balance sheets. Any redeemable noncontrolling interest that fails to qualify as permanent equity will be reclassified as temporary equity and adjusted to the greater of (1) the carrying amount, or (2) its redemption value at the end of the period in which the determination is made.

The redemption value of the OP units not owned by the Parent Company, had such units been redeemed at June 30, 2012, was approximately $53.5 million based on the average closing price of the Parent Company's common stock of $18.17 per share for the ten consecutive trading days immediately preceding June 30, 2012.

The following table shows the vested ownership interests in the Operating Partnership were as follows:

 
June 30, 2012
 
December 31, 2011
 
Operating Partnership Units and LTIP Units
 
Percentage of Total
 
Operating Partnership Units and LTIP Units
 
Percentage of Total
BioMed Realty Trust
152,843,368

 
98.1
%
 
152,435,271

 
98.1
%
Noncontrolling interest consisting of:
 
 
 
 
 
 
 
Operating partnership and LTIP units held by employees and related parties
2,339,314

 
1.5
%
 
2,332,318

 
1.5
%
Operating partnership and LTIP units held by third parties
575,051

 
0.4
%
 
588,801

 
0.4
%
Total
155,757,733

 
100.0
%
 
155,356,390

 
100.0
%

4. Capital of the Operating Partnership

Operating Partnership Units and LTIP Units

As of June 30, 2012, the Operating Partnership had outstanding 156,763,532 operating partnership units and 362,970 LTIP units. The Parent Company owned 98.1% of the partnership interests in the Operating Partnership at June 30, 2012, is the Operating Partnership's general partner and is responsible for the management of the Operating Partnership's business. As the general partner of the Operating Partnership, the Parent Company effectively controls the ability to issue common stock of the Parent Company upon a limited partner's notice of redemption. In addition, the general partner of the Operating Partnership has generally acquired OP units upon a limited partner's notice of redemption in exchange for shares of the Parent Company's common stock. The redemption provisions of OP units owned by limited partners that permit the issuer to settle in either cash or common stock at the option of the issuer are further evaluated in accordance with applicable accounting guidance to determine whether temporary or permanent equity classification on the balance sheet is appropriate. The Operating Partnership evaluated this guidance, including the requirement to settle in unregistered shares, and determined that these OP units meet the requirements to qualify for presentation as permanent equity.

The redemption value of the OP units owned by the limited partners, not including the Parent Company, had such units been redeemed at June 30, 2012, was approximately $53.5 million based on the average closing price of the Parent Company's common stock of $18.17 per share for the ten consecutive trading days immediately preceding June 30, 2012.

5. Debt

Debt of the Parent Company


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The Parent Company does not hold any indebtedness. All debt is held directly or indirectly by the Operating Partnership; however, the Parent Company has guaranteed the Operating Partnership's Exchangeable Senior Notes due 2030 (the “Exchangeable Senior Notes”), Unsecured Senior Notes due 2016 (the “Notes due 2016”), Unsecured Senior Notes due 2020 (the “Notes due 2020”), Unsecured Senior Notes due 2022 (the “Notes due 2022”), Unsecured Senior Term Loan (the “Term Loan”) and unsecured line of credit.

Debt of the Operating Partnership

A summary of the Operating Partnership's outstanding consolidated debt as of June 30, 2012 and December 31, 2011 was as follows (dollars in thousands):

 
Stated Interest Rate
 
Effective Interest Rate
 
Principal Balance
 
 
 
 
June 30,
2012
 
December 31,
2011
 
Maturity Date
Mortgage Notes Payable
 
 
 
 
 
 
 
 
 
Center for Life Science | Boston
7.75
%
 
7.75
%
 
$
340,334

 
$
342,149

 
June 30, 2014
500 Kendall Street (Kendall D)
6.38
%
 
5.45
%
 
61,229

 
62,261

 
December 1, 2018
6828 Nancy Ridge Drive (1)
7.15
%
 
5.38
%
 

 
6,373

 
September 1, 2012
Shady Grove Road
5.97
%
 
5.97
%
 
145,748

 
146,581

 
September 1, 2016
Sidney Street (1)
7.23
%
 
5.11
%
 

 
26,400

 
June 1, 2012
900 Uniqema Boulevard
8.61
%
 
5.61
%
 
710

 
814

 
May 1, 2015
 
 
 
 
 
548,021

 
584,578

 
 
Unamortized premiums
 
 
 
 
2,683

 
3,266

 
 
Mortgage notes payable, net
 
 
 
 
550,704

 
587,844

 
 
Exchangeable Senior Notes
3.75
%
 
3.75
%
 
180,000

 
180,000

 
January 15, 2030
Notes due 2016
3.85
%
 
3.99
%
 
400,000

 
400,000

 
April 15, 2016
Notes due 2020
6.13
%
 
6.27
%
 
250,000

 
250,000

 
April 15, 2020
Notes due 2022
4.25
%
 
4.36
%
 
250,000

 

 
July 15, 2022
 
 
 
 
 
900,000

 
650,000

 
 
Unamortized discounts
 
 
 
 
(6,263
)
 
(4,419
)
 
 
Unsecured senior notes, net
 
 
 
 
893,737

 
645,581

 
 
Unsecured senior term loan (2)
1.90
%
 
2.36
%
 
400,000

 

 
March 30, 2017
Unsecured line of credit (3)
1.79
%
 
1.79
%
 
78,000

 
268,000

 
July 13, 2015
Total consolidated debt
 
 
 
 
$
2,102,441

 
$
1,681,425

 
 
____________

(1)
During the six months ended June 30, 2012, the Operating Partnership repaid in full the outstanding mortgage notes totaling approximately $32.5 million pertaining to the 6828 Nancy Ridge Drive and Sidney Street properties, resulting in a gain on extinguishment representing the write-off of unamortized debt premium, partially offset by the write-off of deferred loan fees, which is included in other expense.
(2)
The effective interest rate includes the impact of interest rate swap agreements (see Note 9 for further discussion of interest rate swap agreements).
(3)
At June 30, 2012, the Operating Partnership had additional borrowing capacity under the unsecured line of credit of up to approximately $658.6 million (net of outstanding letters of credit issued by the Operating Partnership and drawable on the unsecured line of credit of approximately $13.4 million). During the six months ended June 30, 2012, the Operating Partnership amended the credit agreement governing the unsecured line of credit, which provides for a revision to the definition of “gross asset value” to conform to the definition included in the Term Loan credit facility and certain other revisions to reflect the existence of the Term Loan, including changes pertaining to cross-default provisions and negative pledge restrictions. All other material terms under the credit agreement governing the unsecured line of credit remain unchanged.

Unsecured Senior Term Loan


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Table of Contents

On March 30, 2012, the Operating Partnership entered into a $400.0 million Term Loan with KeyBank National Association as Administrative Agent and Co-Lead Arranger, Wells Fargo Securities, LLC as Co-Lead Arranger and Wells Fargo Bank National Association as Co-Syndication Agent, U.S. Bank National Association as Co-Syndication Agent and Co-Lead Arranger and other lenders. The Term Loan has a maturity date of March 30, 2017. Subject to the Administrative Agent's reasonable discretion, the Operating Partnership may increase the amount of the borrowings to $500.0 million under the Term Loan upon satisfying certain conditions. Borrowings under the Term Loan are guaranteed by the Parent Company.

Borrowings under the Term Loan bear interest at a floating rate equal to, at the Operating Partnership's option, either (1) reserve adjusted LIBOR plus a spread which ranges from 115 to 205 basis points, depending on the Company's credit ratings, or (2) the highest of (a) the prime rate then in effect plus a spread which ranges from 15 to 120 basis points, (b) the federal funds rate then in effect plus a spread which ranges from 65 to 170 basis points or (c) one-month LIBOR plus a spread which ranges from 115 to 205 basis points, in each case, depending on the Parent Company's credit ratings.

Concurrent with the closing of the Term Loan, the Operating Partnership entered into interest rate swap agreements, which are intended to have the effect of fixing interest payments associated with $200.0 million of the $400.0 million outstanding under the Term Loan at approximately 2.81% for a five-year term, subject to change depending on the Parent Company's credit ratings.

The Term Loan includes certain restrictions and covenants which require compliance with financial covenants relating to the minimum amounts of net worth, fixed charge coverage, unsecured debt service coverage, overall leverage and unsecured leverage ratios, the maximum amount of secured indebtedness and certain investment limitations. The Term Loan specifies a number of events of default (some of which are subject to applicable cure periods), including, among others, the failure to make payments when due, noncompliance with covenants and defaults under other agreements or instruments of indebtedness. Upon the occurrence of an event of default, the lenders may terminate the Term Loan and declare all amounts outstanding to be immediately due and payable. Management believes that it was in compliance with the covenants as of June 30, 2012.

Unsecured Senior Notes due 2022, net

On June 28, 2012, the Operating Partnership issued $250.0 million aggregate principal amount of its Notes due 2022. The purchase price paid by the underwriters was 99.126% of the principal amount and the Notes due 2022 have been recorded on the consolidated balance sheet net of the discount. The Notes due 2022 are senior unsecured obligations of the Operating Partnership and rank equally in right of payment with all other senior unsecured indebtedness of the Operating Partnership. However, the Notes due 2022 are effectively subordinated to the Operating Partnership's existing and future mortgages and other secured indebtedness (to the extent of the value of the collateral securing such indebtedness) and to all existing and future preferred equity and liabilities, whether secured or unsecured, of the Operating Partnership's subsidiaries, including guarantees provided by the Operating Partnership's subsidiaries under the Operating Partnership's unsecured line of credit. Interest at a rate of 4.25% per year is payable on January 15 and July 15 of each year, beginning on January 15, 2013, until the stated maturity date of July 15, 2022. The terms of the Notes due 2022 are governed by a base indenture and supplemental indenture, dated March 30, 2011 and June 28, 2012, respectively, among the Operating Partnership, as issuer, the Parent Company, as guarantor, and U.S. Bank National Association, as trustee.

The Operating Partnership may redeem the Notes due 2022, in whole or in part, at any time for cash at a redemption price equal to the greater of (1) 100% of the principal amount of the Notes due 2022 being redeemed; or (2) the sum of the present values of the remaining scheduled payments of principal and interest thereon discounted to the redemption date on a semi-annual basis at the adjusted treasury rate plus 45 basis points, plus in each case, accrued and unpaid interest.

The terms of the indenture for the Notes due 2022 require compliance with various financial covenants, including limits on the amount of total leverage and secured debt maintained by the Operating Partnership and which require the Operating Partnership to maintain minimum levels of debt service coverage. Management believes that it was in compliance with these covenants as of June 30, 2012.
 
As of June 30, 2012, principal payments due for the Operating Partnership's consolidated indebtedness (excluding debt premiums and discounts) were as follows (in thousands):


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Table of Contents

2012
$
3,922

2013
8,291

2014
339,020

2015
84,253

2016
543,426

Thereafter(1)
1,127,109

 
$
2,106,021

____________

(1)
Includes $180.0 million in principal payments of the Exchangeable Senior Notes based on a contractual maturity date of January 15, 2030.

6. Earnings Per Share of the Parent Company

Through June 30, 2012 all of the Company's participating securities (including the OP units) received dividends/distributions at an equal dividend/distribution rate per share/unit. As a result, the portion of net income allocable to the weighted-average restricted stock outstanding for the three and six months ended June 30, 2012 and 2011 has been deducted from net income available to common stockholders to calculate basic earnings per share. The calculation of diluted earnings per share for the three and six months ended June 30, 2011 includes the outstanding OP units (both vested and unvested) in the weighted-average shares, and net income attributable to noncontrolling interests in the Operating Partnership has been added back to net income available to common stockholders. For the three and six months ended June 30, 2012, the outstanding OP units (both vested and unvested) were anti-dilutive to the calculation of diluted earnings per share and were therefore excluded and net income attributable to noncontrolling interests in the Operating Partnership was not added back to net income available to common stockholders. For the three and six months ended June 30, 2012, the Performance Units were anti-dilutive to the calculation of diluted earnings per share as calculated, assuming that June 30, 2012 is the end of the Performance Units' Performance Period. For the three and six months ended June 30, 2012 and 2011, the restricted stock was anti-dilutive to the calculation of diluted earnings per share and was therefore excluded. As a result, diluted earnings per share was calculated based upon net income available to common stockholders less net income allocable to unvested restricted stock and distributions in excess of earnings attributable to unvested restricted stock. No shares were issuable upon settlement of the excess exchange value pursuant to the exchange settlement feature of the Operating Partnership's Exchangeable Senior Notes due 2026 (the “Notes due 2026”) as the common stock price at June 30, 2011 did not exceed the exchange price then in effect. In addition, shares issuable upon settlement of the exchange feature of the Exchangeable Senior Notes were anti-dilutive and were not included in the calculation of diluted earnings per share based on the “if converted” method for the three and six months ended June 30, 2012 and 2011. No other shares were considered anti-dilutive for the three and six months ended June 30, 2012 and 2011.

Computations of basic and diluted earnings per share (in thousands, except share data) were as follows:


25

Table of Contents

 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Basic earnings per share:
 
 
 
 
 
 
 
(Loss) / income from continuing operations
$
(5,283
)
 
$
7,852

 
$
1,417

 
$
17,588

Loss / (income) from continuing operations attributable to noncontrolling interests
173

 
(66
)
 
119

 
(170
)
Preferred stock dividends
(3,651
)
 
(4,241
)
 
(7,301
)
 
(8,481
)
Net income allocable and distributions in excess of earnings to participating securities (continuing operations)
(299
)
 
(279
)
 
(618
)
 
(577
)
(Loss) / income from continuing operations available to common stockholders - basic
(9,060
)
 
3,266

 
(6,383
)
 
8,360

 
 
 
 
 
 
 
 
Income / (loss) from discontinued operations
49

 
95

 
(4,370
)
 
236

(Income) / loss from discontinued operations attributable to noncontrolling interests
(1
)
 
(2
)
 
82

 
(5
)
Income / (loss) from discontinued operations available to common stockholders - basic
48

 
93

 
(4,288
)
 
231

 
 
 
 
 
 
 
 
Net (loss) / income available to common stockholders - basic
$
(9,012
)
 
$
3,359

 
$
(10,671
)
 
$
8,591

Diluted earnings per share:
 
 
 
 
 
 
 
(Loss) / income from continuing operations available to common stockholders - basic
(9,060
)
 
3,266

 
(6,383
)
 
8,360

Income from continuing operations attributable to noncontrolling interests

 
80

 

 
202

(Loss) / income from continuing operations available to common stockholders - diluted
(9,060
)
 
3,346

 
(6,383
)
 
8,562

 
 
 
 
 
 
 
 
Income / (loss) from discontinued operations available to common stockholders - basic
48

 
93

 
(4,288
)
 
231

Income from discontinued operations attributable to noncontrolling interests

 
2

 

 
5

Income / (loss) from discontinued operations available to common stockholders - diluted
48

 
95

 
(4,288
)
 
236

 
 
 
 
 
 
 
 
Net (loss) / income available to common stockholders and participating securities - diluted
$
(9,012
)
 
$
3,441

 
$
(10,671
)
 
$
8,798

Weighted-average common shares outstanding:
 
 
 
 
 
 
 
Basic
152,775,422

 
129,858,098

 
152,715,715

 
129,815,154

Incremental shares from assumed conversion:
 
 
 
 
 
 
 
Unvested restricted stock

 

 

 

Operating partnership and LTIP units

 
2,982,834

 

 
2,987,943

Diluted
152,775,422

 
132,840,932

 
152,715,715

 
132,803,097

Basic and diluted earnings per share:
 
 
 
 
 
 
 
(Loss) / income from continuing operations per share available to common stockholders - basic and diluted
$
(0.06
)
 
$
0.03

 
$
(0.04
)
 
$
0.07

Loss from discontinued operations per share available to common stockholders - basic and diluted
$

 
$

 
$
(0.03
)
 
$

Net (loss) / income per share available to common stockholders - basic and diluted
$
(0.06
)
 
$
0.03

 
$
(0.07
)
 
$
0.07


7. Earnings Per Unit of the Operating Partnership

Through June 30, 2012 all of the Operating Partnership's participating securities received distributions at an equal distribution

26

Table of Contents

rate per unit. As a result, the portion of net income allocable to the weighted-average unvested OP units outstanding for the three and six months ended June 30, 2012 and 2011 has been deducted from net income available to unitholders to calculate basic earnings per unit. For the three and six months ended June 30, 2012 and 2011 the unvested OP units were anti-dilutive to the calculation of earnings per unit and were therefore excluded from the calculation of diluted earnings per unit, and diluted earnings per unit is calculated based upon net income attributable to unitholders. For the three and six months ended June 30, 2012, the Performance Units were anti-dilutive to the calculation of diluted earnings per share as calculated, assuming that June 30, 2012 is the end of the Performance Units' Performance Period. No shares of common stock of the Parent Company were contingently issuable upon settlement of the excess exchange value pursuant to the exchange settlement feature of the Notes due 2026 as the common stock price at June 30, 2011 did not exceed the exchange price then in effect. In addition, units issuable upon settlement of the exchange feature of the Exchangeable Senior Notes were anti-dilutive and were not included in the calculation of diluted earnings per unit based on the “if converted” method for the three and six months ended June 30, 2012 and 2011. No other units were considered anti-dilutive for the three and six months ended June 30, 2012 and 2011.

Computations of basic and diluted earnings per unit (in thousands, except share data) were as follows:

 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Basic and diluted earnings per unit:
 
 
 
 
 
 
 
(Loss) / income from continuing operations
$
(5,283
)
 
$
7,852

 
$
1,417

 
$
17,588

Income from continuing operations attributable to noncontrolling interests
6

 
14

 
9

 
32

Preferred unit distributions
(3,651
)
 
(4,241
)
 
(7,301
)
 
(8,481
)
Net income allocable and distributions in excess of earnings to participating securities (continuing operations)
(305
)
 
(291
)
 
(631
)
 
(601
)
(Loss) / income from continuing operations available to common unitholders - basic and diluted
(9,233
)
 
3,334

 
(6,506
)
 
8,538

 
 
 
 
 
 
 
 
Income / (loss) from discontinued operations - basic and diluted
49

 
95

 
(4,370
)
 
236

 
 
 
 
 
 
 
 
Net (loss) / income available to unitholders - basic and diluted
$
(9,184
)
 
$
3,429

 
$
(10,876
)
 
$
8,774

Weighted-average units outstanding:
 
 
 
 
 
 
 
Basic and diluted
155,694,169

 
132,782,072

 
155,641,727

 
132,742,123

Basic and diluted earnings per unit:
 
 
 
 
 
 
 
(Loss) / income from continuing operations per unit available to common unitholders - basic and diluted
$
(0.06
)
 
$
0.03

 
$
(0.04
)
 
$
0.07

Loss from discontinued operations per share available to common unitholders - basic and diluted
$

 
$

 
$
(0.03
)
 
$

Net (loss) / income per unit available to common unitholders, basic and diluted
$
(0.06
)
 
$
0.03

 
$
(0.07
)
 
$
0.07


8. Investment in Unconsolidated Partnerships

The accompanying consolidated financial statements include investments in two limited liability companies with Prudential Real Estate Investors (“PREI”), and in 10165 McKellar Court, L.P. (“McKellar Court”), a limited partnership with Quidel Corporation, the tenant which occupies the McKellar Court property. General information on the PREI limited liability companies and the McKellar Court partnership (each referred to in this footnote individually as a “partnership” and collectively as the “partnerships”) as of June 30, 2012 was as follows:
Name
Partner
 
Company's
Ownership
Interest
 
Company's
Economic
Interest
 
Date Acquired
PREI I LLC(1)
PREI
 
20%
 
20%
 
April 4, 2007
PREI II LLC
PREI
 
20%
 
20%
 
April 4, 2007
McKellar Court(2)
Quidel Corporation
 
22%
 
22%
 
September 30, 2004

27

Table of Contents

____________

(1)
PREI I LLC owns two properties in Cambridge, Massachusetts. At June 30, 2012, there were $139.0 million in outstanding borrowings on a secured loan facility held by a wholly owned subsidiary of PREI I LLC, with a contractual interest rate of 3.25% (including the applicable credit spread) and a maturity date of August 13, 2013.

(2)
The Company's investment in the McKellar Court partnership (maximum exposure to losses) was approximately $12.3 million at June 30, 2012. The Company's economic interest in the McKellar Court partnership entitles it to 75% of the extraordinary cash flows after repayment of the partners' capital contributions and 22% of the operating cash flows.

The condensed combined balance sheets for all of the Company's unconsolidated partnerships were as follows (in thousands):

 
June 30,
2012
 
December 31,
2011
Assets:
 
 
 
Investments in real estate, net
$
254,207

 
$
257,297

Cash and cash equivalents (including restricted cash)
2,603

 
4,384

Other assets
4,555

 
2,392

Total assets
$
261,365

 
$
264,073

Liabilities and members' equity:
 
 
 
Mortgage notes payable and secured loan
$
149,255

 
$
149,256

Other liabilities
2,604

 
1,408

Members' equity
109,506

 
113,409

Total liabilities and equity
$
261,365

 
$
264,073

Company's net investment in unconsolidated partnerships
$
32,562

 
$
33,389


The selected data and results of operations for the unconsolidated partnerships were as follows (in thousands):
 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Total revenues
$
2,182

 
$
2,169

 
$
4,386

 
$
4,223

Total expenses
(4,766
)
 
(4,588
)
 
(9,781
)
 
(9,396
)
Loss from continuing operations
(2,584
)
 
(2,419
)
 
(5,395
)
 
(5,173
)
Loss from discontinued operations

 
(1,292
)
 

 
(3,211
)
Net loss
$
(2,584
)
 
$
(3,711
)
 
$
(5,395
)
 
$
(8,384
)
 
 
 
 
 
 
 
 
Company's equity in net loss of unconsolidated partnerships
$
(317
)
 
$
(466
)
 
$
(671
)
 
$
(1,115
)
 
 
 
 
 
 
 
 
Fees earned by the Company (1)
$
23

 
$
266

 
$
45

 
$
624

____________

(1)
The Company acts as the operating member or partner, as applicable, and day-to-day manager for the partnerships. The Company is entitled to receive fees for providing construction and development services (as applicable) and management services to the PREI joint ventures, which are reflected in tenant recoveries and other income in the consolidated statements of income.

9. Derivatives and Other Financial Instruments

On March 30, 2012, the Company entered into four interest rate swaps with an aggregate notional amount of $200.0 million under which at each monthly settlement date the Company either (1) receives the difference between a fixed interest rate (the “Strike Rate”) and one-month LIBOR if the Strike Rate is less than one-month LIBOR or (2) pays such difference if the Strike Rate is greater than one-month LIBOR. The interest rate swaps hedge the Company's exposure to the variability on expected cash flows attributable to changes in interest rates on the first interest payments, due on the date that is on or closest after each swap's settlement date, associated with the amount of one-month LIBOR-based debt equal to each swap's notional amount. These interest

28

Table of Contents

rate swaps, with a notional amount of $200.0 million, are currently intended to hedge interest payments associated with the Operating Partnership's Term Loan. No initial investment was made to enter into the interest rate swap agreements.

As of June 30, 2012, the Company had deferred interest costs of approximately $45.6 million in accumulated other comprehensive loss related to forward starting swaps, which were settled with the corresponding counterparties in March and April 2009. The forward starting swaps were entered into to mitigate the Company's exposure to the variability in expected future cash flows attributable to changes in future interest rates associated with a forecasted issuance of fixed-rate debt, with interest payments for a minimum of ten years. The deferred interest costs will be amortized as additional interest expense over a remaining period of approximately seven years.

The following is a summary of the terms of the interest rate swaps and stock purchase warrants and their respective fair-values, which are included in accounts payable, accrued expenses and other liabilities on the accompanying consolidated balance sheets (dollars in thousands):

 
Notional Amount
 
 
 
 
 
 
 
Fair-Value(1)
 
 
Strike Rate
 
Effective Date
 
Expiration Date
 
June 30,
2012
 
December 31,
2011
 
$
75,000

 
1.163
%
 
March 30, 2012
 
March 30, 2017
 
$
(1,373
)
 
$

 
50,000

 
1.163
%
 
March 30, 2012
 
March 30, 2017
 
(913
)
 

 
50,000

 
1.163
%
 
March 30, 2012
 
March 30, 2017
 
(930
)
 

 
25,000

 
1.163
%
 
March 30, 2012
 
March 30, 2017
 
(485
)
 

Interest rate swaps
200,000

 
 
 
 
 
 
 
(3,701
)
 

Other(2)

 
 
 
 
 
 
 
1

 
9

Total derivative instruments
$
200,000

 
 
 
 
 
 
 
$
(3,700
)
 
$
9

____________

(1)
Fair-value of derivative instruments does not include any related accrued interest payable, which is included in accrued expenses on the accompanying consolidated balance sheets. Derivative valuations are classified in Level 2 of the fair-value hierarchy.
(2)
Includes stock purchase warrants recorded as derivative instruments in other assets on the accompanying consolidated balance sheets. Changes in the fair-values of stock purchase warrants are included in earnings in the period in which they occur.

For derivatives designated as cash flow hedges, the effective portion of changes in the fair-value of the derivative is initially reported in other comprehensive income (outside of earnings) and subsequently reclassified to earnings in the period in which the hedged forecasted transaction affects earnings. During the three and six months ended June 30, 2012 and 2011, such derivatives were used to hedge the variable cash flows associated with existing variable-rate debt and future variability in the interest-related cash flows from forecasted issuances of debt. The ineffective portion of the change in fair-value of the derivatives is recognized directly in earnings.

The Company's use of proceeds from its March 2011 unsecured debt offering to repay a portion of the outstanding indebtedness on its unsecured line of credit caused the amount of variable-rate indebtedness to fall below the combined notional value of the outstanding interest rate swaps on March 30, 2011, causing the Company to be overhedged. As a result, the Company re-performed tests to assess the effectiveness of its interest rate swaps. Although the interest rate swaps with an aggregate notional amount of $150.0 million passed the assessment tests and the $115.0 million swap continued to qualify for hedge accounting, the $35.0 million swap no longer qualified for hedge accounting due to the lack of variable rate debt expected to be outstanding during the remaining term of the swap. As a result, the Company accelerated the reclassification of amounts deferred in accumulated other comprehensive loss to earnings related to the hedged forecasted transactions that became probable of not occurring during the period in which the Company was overhedged. From the date that hedge accounting was discontinued on the $35.0 million swap, changes in the fair-value associated with this interest rate swap were recorded directly to earnings, resulting in the recognition of a gain of approximately $10,000 and $13,000 for the three and six months ended June 30, 2011, respectively, which is included as a component of other expense. These swaps expired in August 2011.

During the six months ended June 30, 2012, the Company recorded a total loss on derivative instruments of $8,000 primarily related to changes in the fair-value of other derivative instruments. During the three months ended June 30, 2011, the Company recorded total gain on derivative instruments of $383,000 primarily related to the increase in the amount of the variable-rate indebtedness related to the $150.0 million interest rate swaps and changes in the fair-value of other derivative instruments. During

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Table of Contents

the six months ended June 30, 2011, the Company recorded total loss on derivative instruments of $628,000, primarily related to the reduction in the amount of the variable-rate indebtedness relating to the $150.0 million interest rate swaps, hedge ineffectiveness on cash flow hedges due to mismatches in maturity dates and interest rate reset dates between the interest rate swaps and corresponding debt and changes in the fair-value of other derivative instruments. Gains and losses on derivative instruments are included in Other expense within the income statement.

Amounts reported in accumulated other comprehensive loss related to derivatives will be reclassified to earnings during the period in which the hedged forecasted transaction affects earnings. The change in net unrealized (loss)/gain on derivative instruments includes reclassifications of net unrealized losses from accumulated other comprehensive loss as (1) an increase to interest expense of $2.2 million and $4.0 million for the three and six months ended June 30, 2012, respectively, and $3.1 million and $6.5 million for the three and six months ended June 30, 2011, respectively, and (2) a loss on derivative instruments of $8,000 for the six months ended June 30, 2012, and a gain on derivative instruments of $383,000 for the three months ended June 30, 2011, and a loss on derivative instruments of $628,000 for the six months ended June 30, 2011. During the next twelve months, the Company estimates that an additional $8.6 million will be reclassified from accumulated other comprehensive loss as an increase to interest expense.

The following is a summary of the amount of loss recognized in other comprehensive income related to the derivative instruments (in thousands):

 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Amount of loss recognized in other comprehensive income (effective portion):
 
 
 
 
 
 
 
Cash flow hedges
 
 
 
 
 
 
 
Interest rate swaps
$
(3,879
)
 
$
(42
)
 
$
(4,178
)
 
$
(104
)
 
 
 
 
 
 
 
 
Amount of loss reclassified from accumulated other comprehensive loss to income (effective portion):
 
 
 
 
 
 
 
Cash flow hedges
 
 
 
 
 
 
 
Interest rate swaps(1)
$
(467
)
 
$
(1,296
)
 
$
(477
)
 
$
(2,941
)
Forward starting swaps(2)
(1,736
)
 
(1,760
)
 
(3,479
)
 
(3,525
)
Total interest rate swaps
$
(2,203
)
 
$
(3,056
)
 
$
(3,956
)
 
$
(6,466
)
 
 
 
 
 
 
 
 
Amount of gain / (loss) recognized in income (ineffective portion and amount excluded from effectiveness testing):
 
 
 
 
 
 
 
Cash flow hedges
 
 
 
 
 
 
 
Interest rate swaps
$

 
$
372

 
$

 
$
(79
)
Ineffective interest rate swaps

 
(10
)
 

 
(545
)
Total interest rate swaps

 
362

 

 
(624
)
Other derivative instruments

 
21

 
(8
)
 
(4
)
Total gain / (loss) on derivative instruments
$

 
$
383

 
$
(8
)
 
$
(628
)
____________

(1)
Amount represents payments made to swap counterparties for the effective portion of interest rate swaps that were recognized as an increase to interest expense for the periods presented (the amount was recorded as an increase and corresponding decrease to accumulated other comprehensive loss in the same accounting period).

(2)
Amount represents reclassifications of deferred interest costs from accumulated other comprehensive loss to interest expense related to the Company's previously settled forward starting swaps.

10. Fair-Value of Financial Instruments

The Company's disclosures of estimated fair-value of financial instruments at June 30, 2012 and December 31, 2011 were determined using available market information and appropriate valuation methods. Considerable judgment is necessary to interpret

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market data and develop estimated fair-value. The use of different market assumptions or estimation methods may have a material effect on the estimated fair-value amounts.

The carrying amounts for cash and cash equivalents, accounts receivable, accounts payable, accrued expenses and other liabilities approximate fair-value due to the short-term nature of these instruments.

The Company utilizes quoted market prices to estimate the fair-value of its fixed-rate and variable-rate debt, when available. If quoted market prices are not available, the Company calculates the fair-value of its mortgage notes payable and other fixed-rate debt based on a currently available market rate assuming the loans are outstanding through maturity and considering the collateral. In determining the current market rate for fixed-rate debt, a market credit spread is added to the quoted yields on federal government treasury securities with similar terms to debt. In determining the current market rate for variable-rate debt, a market credit spread is added to the current effective interest rate. The carrying values of interest rate swaps are reflected at their fair-values.

At June 30, 2012 and December 31, 2011, the aggregate fair-value and the carrying value of the Company's financial instruments were as follows (in thousands):

 
June 30, 2012
 
December 31, 2011
 
Fair-Value (1)
 
Carrying Value
 
Fair-Value (1)
 
Carrying Value
Mortgage notes payable, net
$
621,684

 
$
550,704

 
$
670,931

 
$
587,844

Exchangeable Senior Notes
209,340

 
180,000

 
206,775

 
180,000

Notes due 2016, net
411,960

 
398,046

 
396,880

 
397,810

Notes due 2020, net
283,300

 
247,875

 
266,775

 
247,771

Notes due 2022, net
250,875

 
247,816

 

 

Unsecured senior term loan
400,000

 
400,000

 

 

Unsecured line of credit
78,000

 
78,000

 
268,000

 
268,000

Derivative instruments (2)
(3,700
)
 
(3,700
)
 
9

 
9

Available-for-sale securities
299

 
299

 
988

 
988

____________

(1)
Fair-values of debt and derivative instruments are classified in Level 2 of the fair-value hierarchy. Fair-value of available-for-sale securities are classified in Level 1 of the fair-value hierarchy.

(2)
The Company's derivative instruments are reflected in other assets and other liabilities on the accompanying consolidated balance sheets based on their respective balances (see Note 9).

11. Acquisitions

The Company acquired the following properties during the six months ended June 30, 2012. The table below reflects the purchase price allocation for these acquisitions (in thousands):

Property
 
Acquisition Date
 
Investments in Real Estate
 
Above Market Lease
 
In-Place Lease
 
Management
Agreement
 
Below Market Lease
 
Acquisition Date Fair- Value
210 Broadway
 
February 9, 2012
 
$
23,190

 
$

 
$
252

 
$
10

 
$

 
$
23,452

50 Hampshire Street
 
February 9, 2012
 
77,742

 

 
9,874

 
2,079

 

 
89,695

60 Hampshire Street
 
February 9, 2012
 
4,361

 

 
1,651

 

 
(159
)
 
5,853

6122-6126 Nancy Ridge Drive
 
April 25, 2012
 
15,359

 
608

 
3,861

 
172

 

 
20,000

550 Broadway Street
 
April 27, 2012
 
28,000

 

 

 

 

 
28,000

Summers Ridge
 
June 8, 2012
 
47,102

 

 

 

 

 
47,102

Granta Park (1)
 
June 12, 2012
 
175,458

 
603

 
23,068

 

 
(3,085
)
 
196,044

Total
 
 
 
$
371,212

 
$
1,211

 
$
38,706

 
$
2,261

 
$
(3,244
)
 
$
410,146

Weighted average intangible amortization life (in months)
 
134

 
103

 
101

 
92

 
 

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____________

(1)
The property was acquired in the United Kingdom for £126.8 million. US Dollar amounts are based on the exchange rate of $1.55 to £1.00 in effect on the date of acquisition.

Revenues of approximately $6.1 million and net loss of approximately $8.5 million associated with properties acquired in 2012 are included in the consolidated statements of operations for the six months ended June 30, 2012 for both the Parent Company and the Operating Partnership.

On July 18, 2012, the Company acquired two buildings totaling approximately 106,500 square feet located at 9900/9901 Belward Campus Drive in Rockville, Maryland for approximately $26.2 million, including the assumption of mortgage notes totaling approximately $24.1 million.

Pro Forma Results of the Parent Company

The unaudited pro forma revenues and operating income of the Parent Company, for the acquisitions that occurred in 2012 as if they had taken place on January 1, 2011, are as follows (in thousands except per share amounts):

 
Six Months Ended June 30,
 
2012
 
2011
Total revenues
$
255,714

 
$
229,129

Net income available to common stockholders
11,160

 
255

Net income per share available to common stockholders - basic and diluted
$
0.07

 
$


Pro forma data may not be indicative of the results that would have been reported had the acquisitions actually occurred as of January 1, 2011, nor does it intend to be a projection of future results.

Pro Forma Results of the Operating Partnership

The unaudited pro forma revenues and operating income of the Operating Partnership, for the acquisitions that occurred in 2012 as if they had taken place on January 1, 2011, are as follows (in thousands except per share amounts):

 
Six Months Ended June 30,
 
2012
 
2011
Total revenues
$
255,714

 
$
229,129

Net income available to unitholders
10,968

 
462

Net income per unit available to unitholders - basic and diluted
$
0.07

 
$


Pro forma data may not be indicative of the results that would have been reported had the acquisitions actually occurred as of January 1, 2011, nor does it intend to be a projection of future results.

12. Discontinued Operations

In April 2012, the Company completed the exchange of an operating property on Forbes Boulevard in South San Francisco for an office property located in Redwood City, California. As a result, during the six months ended June 30, 2012, the Company reclassified the Forbes Boulevard property as a discontinued operation. The table below reflects the details of the property and the exchange (in thousands):
Property
 
Date of Sale
 
Original Acquisition Date
 
Sales Price (1)
 
Impairment loss
Forbes Boulevard
 
April 27, 2012
 
September 5, 2007
 
$
28,000

 
$
(4,552
)
_________

(1)
The sales price was equal to the fair-value of the office property received as consideration for the exchange from the independent third party.

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The results of operations of the Forbes Boulevard property are reported as discontinued operations for all periods presented in the accompanying consolidated financial statements. The following table summarizes the revenue and expense components that comprise income / (loss) from discontinued operations (in thousands):
 
Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Total revenues
$
102

 
$
389

 
$
454

 
$
741

Total expenses
53

 
294

 
272

 
505

 Income from discontinued operations before impairment loss
49

 
95

 
182

 
236

Impairment loss

 

 
(4,552
)
 

 Income / (loss) from discontinued operations
$
49

 
$
95

 
$
(4,370
)
 
$
236


Discontinued operations have not been segregated in the consolidated statements of cash flows. Therefore, amounts for certain captions will not agree with respective data in the consolidated statements of operations.
ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

As used herein, the terms “we,” “us,” “our” or the “Company” refer to BioMed Realty Trust, Inc., a Maryland corporation, and any of our subsidiaries, including BioMed Realty, L.P., a Maryland limited partnership of which BioMed Realty Trust, Inc. is the parent company and general partner, which may be referred to herein as the “operating partnership.”

The following discussion should be read in conjunction with the consolidated financial statements and notes thereto appearing elsewhere in this report. We make statements in this report that are forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995. In particular, statements pertaining to our capital resources, portfolio performance and results of operations contain forward-looking statements. Forward-looking statements involve numerous risks and uncertainties and you should not rely on them as predictions of future events. Forward-looking statements depend on assumptions, data or methods which may be incorrect or imprecise, and we may not be able to realize them. We do not guarantee that the transactions and events described will happen as described (or that they will happen at all). You can identify forward-looking statements by the use of forward-looking terminology such as “believes,” “expects,” “may,” “will,” “should,” “seeks,” “approximately,” “intends,” “plans,” “estimates” or “anticipates” or the negative of these words and phrases or similar words or phrases. You can also identify forward-looking statements by discussions of strategy, plans or intentions. The following factors, among others, could cause actual results and future events to differ materially from those set forth or contemplated in the forward-looking statements: adverse economic or real estate developments in the life science industry or in our target markets, including the inability of our tenants to obtain funding to run their businesses; our dependence upon significant tenants; our failure to obtain necessary outside financing on favorable terms or at all, including the continued availability of our unsecured line of credit; general economic conditions, including downturns in the foreign, domestic and local economies; volatility in financial and securities markets; defaults on or non-renewal of leases by tenants; our inability to compete effectively; changes in interest rates and foreign currency exchange rates; increased operating costs; our inability to successfully complete real estate acquisitions, developments and dispositions; risks and uncertainties affecting property development and construction; our failure to manage effectively our growth and expansion into new markets or to successfully operate acquired properties and operations; our ownership of properties outside of the United States that subject us to different and potentially greater risks than those associated with our domestic operations; risks associated with our investments in loans, including borrower defaults and potential principal losses; reductions in asset valuations and related impairment charges; the loss of services of one or more of our executive officers; our failure to qualify or continue to qualify as a REIT; our failure to maintain our investment grade corporate credit ratings or a downgrade in our investment grade corporate credit ratings from one or more of the rating agencies; government approvals, actions and initiatives, including the need for compliance with environmental requirements; the effects of earthquakes and other natural disasters; lack of or insufficient amounts of insurance; and changes in real estate, zoning and other laws and increases in real property tax rates. We disclaim any intention or obligation to update or revise any forward-looking statements, whether as a result of new information, future events or otherwise.

The risks included here are not exhaustive, and additional factors could adversely affect our business and financial performance, including factors and risks included in other sections of this report. In addition, we discussed a number of material risks in our annual report on Form 10-K for the year ended December 31, 2011. Those risks continue to be relevant to our performance and financial condition. Moreover, we operate in a very competitive and rapidly changing environment. New risk factors emerge from time to time and it is not possible for management to predict all such risk factors, nor can it assess the impact of all such risk factors on our company's business or the extent to which any factor, or combination of factors, may cause actual results to differ

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materially from those contained in any forward-looking statements. Given these risks and uncertainties, investors should not place undue reliance on forward-looking statements as a prediction of actual results.

Overview
We operate as a fully integrated, self-administered and self-managed REIT focused on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry. Our tenants primarily include biotechnology and pharmaceutical companies, scientific research institutions, government agencies and other entities involved in the life science industry. Our properties are generally located in markets with well-established reputations as centers for scientific research, including Boston, San Francisco, San Diego, Maryland, New York/New Jersey, Pennsylvania, and Seattle.
At June 30, 2012, we owned or had interests in a portfolio with an aggregate of approximately 13.0 million rentable square feet.
The following reflects the classification of our properties between stabilized properties (operating properties in which more than 90% of the rentable square footage is under lease), lease up properties (operating properties in which less than 90% of the rentable square footage is under lease), long-term lease up properties (our Pacific Industrial Center, Pacific Research Center North and Pacific Research Center South properties), redevelopment properties (properties that are currently being prepared for their intended use), unconsolidated partnership properties (properties which we partially own, but are not included in our consolidated financial statements) and development potential (representing management's estimates of rentable square footage if development of these properties was undertaken) at June 30, 2012:
 
 
 
 
 
 
 
Weighted-
 
Gross
 
 
 
Rentable
 
Average
 
Book Value
 
Buildings
 
Square Feet
 
Leased (1)
 
(In thousands)
 
 
 
 
 
 
Stabilized
$
3,205,676

 
105

 
7,740,674

 
99.6
%
Lease up
1,041,599

 
44

 
3,278,452

 
67.6
%
Current operating portfolio
4,247,275

 
149

 
11,019,126

 
91.8
%
Long-term lease up
335,078

 
10

 
1,389,517

 
64.3
%
Total operating portfolio
4,582,353

 
159

 
12,408,643

 
89.8
%
 
 
 
 
 
 
 
 
Redevelopment
45,024

 
4

 
196,867

 
33.6
%
Unconsolidated partnership portfolio
32,562

 
3

 
352,863

 
56.4
%
 
4,659,939

 
166

 
12,958,373

 
89.0
%
 
 
 
 
 
 
 
 
Development potential
204,798

 

 
3,952,000

 

Total portfolio
$
4,864,737

 
166

 
16,910,373

 
 
(1)
Calculated based on gross book value for each asset multiplied by the percentage leased.
Factors Which May Influence Future Operations
Our long-term corporate strategy is to continue to focus on acquiring, developing, owning, leasing and managing laboratory and office space for the life science industry. As of June 30, 2012, our current consolidated operating portfolio was 91.8% leased on a weighted-average basis to 191 tenants. As of December 31, 2011, our current consolidated operating portfolio was 90.2% leased on a weighted-average basis to 170 tenants. The increase in the overall leased percentage was due to an increase in leased square feet related to increased leasing activity and acquisitions of fully leased properties. Our current operating portfolio increased by approximately 659,700 rentable square feet at June 30, 2012 compared to December 31, 2011, and total leased square footage increased by approximately 1.1 million square feet, or 11.1%, during the same period.
Our leasing strategy for 2012 focuses on leasing vacant space, negotiating renewals for leases scheduled to expire during the year, and identifying new tenants or existing tenants seeking additional space to occupy the spaces for which we are unable to negotiate such renewals. We may proceed with additional new developments and acquisitions, as real estate and capital market conditions permit. As of June 30, 2012, leases representing 3.0% and 4.6% of our leased square feet are scheduled to expire during 2012 and 2013, respectively. The success of our leasing and development strategy will be dependent upon the general economic conditions and more specifically real estate market conditions and life science industry trends in the United States and in our target markets. We cannot provide any assurance that leases will be renewed or that available space will be released at rental rates equal

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to or above the current contractual rental rates or at all.
As a direct result of the recent economic recession, we believe that the fair-values of some of our properties may have declined below their respective carrying values. However, to the extent that a property has a substantial remaining estimated useful life and management does not believe that the property will be disposed of prior to the end of its useful life, it would be unusual for undiscounted cash flows to be insufficient to recover the property's carrying value. During the six months ended June 30, 2012, the Company disposed of one property in an exchange with a third party for another operating property. As the carrying value of the property disposed of was less than the consideration received in exchange, an impairment loss was recorded. Other than the property sold, we presently have the ability and intent to continue to own and operate our existing portfolio of properties and estimated undiscounted future cash flows from the operation of the properties are expected to be sufficient to recover the carrying value of each property. Accordingly, we do not believe that the carrying value of any of our other properties is impaired. If our ability and/or our intent with regard to the operation of our properties otherwise dictate an earlier sale date, an additional impairment loss may be recognized to reduce the property to fair-value and such loss could be material.

A discussion of additional factors which may influence future operations can be found below under Part II, Item 1A, “Risk Factors” and in our annual report on Form 10-K for the year ended December 31, 2011.
Critical Accounting Policies

A complete discussion of our critical accounting policies can be found in our annual report on Form 10-K for the year ended December 31, 2011.
Results of Operations
Leasing Activity

During the six months ended June 30, 2012, we executed 45 leasing transactions representing 817,074 square feet, including 32 new leases totaling 658,797 square feet and 13 leases amended to extend their terms, totaling 158,277 square feet. The following table summarizes our leasing activity, including leasing activity in our unconsolidated portfolio, during the six months ended June 30, 2012:

 
 
Leased Square Feet
 
Current annualized base rent per leased square foot (1)
 
Current annualized base rent per leased square foot - GAAP basis (2)
Leased square feet as of December 31, 2011
 
10,075,859

 
 
 
 
Acquisitions
 
839,089

 
$
33.28

 
$
34.44

Dispositions
 
(121,008
)
 
9.48

 
9.54

Expirations
 
(404,214
)
 
32.64

 
30.30

Terminations
 
(66,545
)
 
27.50

 
25.81

Pre-leased delivery
 
50,909

 
25.04

 
26.41

Renewals, amendments, and extensions
 
158,277

 
25.17

 
22.05

New leases - first generation(3)
 
539,499

 
27.91

 
30.76

New leases - second generation(4)
 
119,298

 
26.47

 
26.30

Leased square feet as of June 30, 2012
 
11,191,164

 
 
 
 
____________

(1)
Current annualized base rent per leased square foot is the monthly contractual rent per leased square foot as of the current period ended, or if rent has not yet commenced, the first monthly rent payment per leased square foot due at each rent commencement date, multiplied by 12 months.

(2)
Current annualized base rent per leased square foot - GAAP basis is the monthly contractual rent per square foot as of the current period ended, or if rent has not yet commenced, the first monthly rent payment per square foot due at each rent commencement date, multiplied by 12 months as adjusted for straight line rent, fair-value lease revenue, and lease incentive revenue.

(3)
Leases on space which, in management's evaluation, require significant improvements to prepare or condition the premises

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for its intended purpose or enhance the value of the property. This generally includes capital expenditures for development, redevelopment or repositioning a property.

(4)
Leases which are not considered by management to be first generation leases.

The following table summarizes our leasing activity and associated leasing costs for the six months ended June 30, 2012:
 
 
Number of leases
 
Square feet
 
Tenant improvement costs per square foot
 
Lease commission costs per square foot
 
Tenant concession costs per square foot (1)
Renewals, amendments, and extensions(2)
 
13

 
158,277

 
$
4.71

 
$
1.97

 
$
3.71

New leases - first generation
 
16

 
539,499

 
59.44

 
11.65

 
19.07

New leases - second generation
 
16

 
119,298

 
20.12

 
3.82

 
5.30

Total / weighted-average
 
45

 
817,074

 
$
43.10

 
$
8.63

 
$
14.09

____________

(1)
Includes both rent concessions due to free or discounted rent periods and lease incentives paid to tenants.

(2)
Renewals, amendments and extensions were leased at a weighted-average current annualized base rent of $27.60 per square foot, representing a decrease of 0.6% over the previously expiring rents on a GAAP basis, excluding renewals of leases with tenants experiencing financial difficulties for which we were not previously recognizing revenue.
Redevelopment/Development Activity
The following summarizes our consolidated properties under redevelopment, pre-development or other construction activities at June 30, 2012 (dollars in thousands):
 
 
 
 
 
 
Capitalized
 
 
 
 
 
 
 
 
Rentable
 
 
 
Interest
 
 
 
Estimated
 
Estimated
 
 
Square
 
Percent
 
3 Mo. Ended
 
Investment
 
Total
 
In-Service
Property
 
Feet
 
Leased
 
6/30/12 (1)
 
to Date (2)
 
Investment (3)
 
Date (4)
 
 
 
 
 
 
 
 
 
 
 
 
 
Redevelopment
 
 
 
 
 
 
 
 
 
 
 
 
Ardsley Park
 
160,500

 
100.0
%
 
$
329

 
$
34,700

 
$
36,000

 
In-service
9708-9714 Medical Center Drive
 
92,124

 
5.9
%
 
373

 
29,000

 
29,400

 
Q1 2013
1701 / 1711 Research Blvd
 
104,743

 
100.0
%
 
222

 
13,200

 
28,200

 
Q2 2013
Total / weighted-average
 
357,367

 
75.7
%
 
$
924

 
$
76,900

 
$
93,600

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Pre-development
 
 
 
 
 
 
 
 
 
 
 
 
Eccles Avenue
 
260,000

 

 
$
364

 
$
28,100

 
$
29,200

 
 
4775 / 4785 Executive Drive
 
250,000

 

 
367

 
28,500

 
28,600

 
 
450 Kendall Street (Kendall G)
 
53,000

 

 
118

 
9,200

 
10,400

 
 
Total / weighted-average
 
563,000

 

 
$
849

 
$
65,800

 
$
68,200

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Other Capital Improvements (5)
 
 
 
 
 
$
317

 
$
29,600

 
$
68,400

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Total / weighted-average
 

 
 
 
$
2,090

 
$
172,300

 
$
230,200

 
 
___________

(1)
Interest was capitalized at an average rate of 5.23% during the three months ended June 30, 2012.

(2)
Includes amounts paid for acquiring the property, landlord improvements, and tenant improvement allowances, but

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excludes any amounts accrued, and payroll, interest or operating expenses capitalized, through June 30, 2012.

(3)
Excludes costs associated with speculative leasing. Pre-development only includes amounts related to basis, planning, entitlement, or other preparations for future construction and excludes amounts for total estimated future construction costs.

(4)
Management's estimate of the time in which construction is substantially completed. A project is considered substantially complete and held available for occupancy upon the completion of tenant improvements, but no later than one year from cessation of major construction activity.

(5)
Includes improvements on operating properties, including major tenant improvement projects on properties which are not considered to be in Redevelopment or Pre-development as of June 30, 2012.

The following summarizes our capital expenditures during the six months ended June 30, 2012 and 2011 (dollars in thousands):

 
Six Months Ended
 
 
 
 
 
June 30,
 
 
 
Percent
 
2012
 
2011
 
Change
 
Change
Development / Pre-development
$
2,422

 
$
28,146

 
$
(25,724
)
 
(91.4
)%
Redevelopment
19,123

 
3,810

 
15,313

 
401.9
 %
Tenant improvements - first generation
32,320

 
19,730

 
12,590

 
63.8
 %
Recurring capital expenditures and second generation tenant improvements(1)
6,294

 
6,051

 
243

 
4.0
 %
Other capital
19,544

 
23,800

 
(4,256
)
 
(17.9
)%
Total capital expenditures
$
79,703

 
$
81,537

 
$
(1,834
)
 
(2.2
)%
___________

(1)
Recurring capital expenditures exclude (a) capital improvements that were taken into consideration when underwriting the purchase of a building, (b) items associated with the expansion of a building or its improvements, (c) renovations to a building which change the underlying classification of the building, incurred to prepare or condition the premises for its intended purpose (for example, from office to laboratory) or (d) capital improvements that represent an addition to the property rather than the replacement of property, plant, or equipment. Includes revenue enhancing and non-revenue enhancing recurring capital expenditures.

Total capital expenditures decreased $1.8 million to $79.7 million for the six months ended June 30, 2012 from $81.5 million for the six months ended June 30, 2011. The change was primarily the result of the placement into service of a development property that was under development in 2011 totaling 176,000 square feet and less small scale capital expenditures throughout our portfolio, partially offset by the three new redevelopment projects described above and increased tenant improvement requirements related to increased leasing activity. See discussion in Liquidity and Capital Resources of BioMed Realty, L.P. for further information on obligations for capital expenditures expected to be incurred in the future.

Acquisition Activity

During the six months ended June 30, 2012, we acquired 898,351 rentable square feet of laboratory and office space, which was 93.4% leased at acquisition on a weighted-average basis, for $410.1 million:

Property
 
Market
 
Closing Date
 
Rentable Square Feet
 
Investment
 
Percent Leased at Acquisition
 
 
 
 
 
 
 
 
(In thousands)
 
 
Cambridge Place(1)
 
Boston
 
February 9, 2012
 
286,878

 
$
119,000

 
80.2
%
6122-6126 Nancy Ridge Drive
 
San Diego
 
April 25, 2012
 
68,000

 
20,000

 
100.0
%
550 Broadway Street
 
San Francisco
 
April 27, 2012
 
71,239

 
28,000

 
100.0
%
Summers Ridge(2)
 
San Diego
 
June 8, 2012
 

 
47,102

 
n/a

Granta Park
 
University Related - Other
 
June 12, 2012
 
472,234

 
196,044

 
99.5
%
Total / weighted-average
 
 
 
 
 
898,351

 
$
410,146

 
93.4
%

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Table of Contents

___________

(1)
Includes 210 Broadway, 50 Hampshire Street and 60 Hampshire Street properties.
(2)
Includes vacant land subject to a 20 year ground lease signed subsequent to acquisition.

Comparison of the Three Months Ended June 30, 2012 to the Three Months Ended June 30, 2011
The following table sets forth historical financial information of the continuing operations for same properties (all properties except properties held for sale, redevelopment/development, new properties, and corporate entities), redevelopment/development properties (properties that were entirely or primarily under redevelopment or development during either of the three months ended June 30, 2012 or 2011), new properties (properties that were not owned for each of the three months ended June 30, 2012 and 2011 and were not under redevelopment/development) and corporate entities (legal entities performing general and administrative functions and fees received from our PREI joint ventures) (dollars in thousands, except on a per square foot basis):
 
Same Properties
 
Redevelopment/Development
Properties
 
New Properties
 
Corporate
 
Total
 
June 30,
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
Rentable square feet
10,465,607

 
10,465,607

 
533,367

 
533,367

 
1,606,536

 

 
N/A

 
N/A

 
12,605,510

 
10,998,974

Percent of total portfolio
83.0
%
 
95.2
%
 
4.2
%
 
4.8
%
 
12.8
%
 
N/A

 
N/A

 
N/A

 
100.0
%
 
100.0
%
Percent leased
87.5
%
 
84.3
%
 
83.7
%
 
82.7
%
 
86.2
%
 
N/A

 
N/A

 
N/A

 
87.2
%
 
84.3
%
Current annualized base rent per square foot - GAAP basis (1)
$
37.44

 
$
38.27

 
$
34.68

 
$
34.80

 
$
44.22

 
N/A

 
N/A

 
N/A

 
$
38.19

 
$
38.10

 
Three Months Ended June 30,
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
Rental revenue
$
82,273

 
$
80,558

 
$
2,211

 
$
585

 
$
11,222

 
$

 
$
2

 
$
2

 
$
95,708

 
$
81,145

Tenant recoveries
25,037

 
24,361

 
246

 
75

 
3,599

 

 
57

 
287

 
28,939

 
24,723

Other income
107

 
541

 

 

 
5

 

 
89

 

 
201

 
541

    Total revenues
107,417

 
105,460

 
2,457

 
660

 
14,826

 

 
148

 
289

 
124,848

 
106,409

Rental operations
29,082

 
30,137

 
342

 
118

 
6,030

 

 
1,590

 
1,043

 
37,044

 
31,298

Net operating income
78,335

 
75,323

 
2,115

 
542

 
8,796

 

 
(1,442
)
 
(754
)
 
87,804

 
75,111

Adjustments to cash basis (2)
(1,608
)
 
(3,250
)
 
(452
)
 

 
1,145

 

 
(89
)
 

 
(1,004
)
 
(3,250
)
Net operating income - cash basis
$
76,727

 
$
72,073

 
$
1,663

 
$
542

 
$
9,941

 
$

 
$
(1,531
)
 
$
(754
)
 
$
86,800

 
$
71,861

____________

(1)
Current annualized base rent per square foot - GAAP basis is the monthly contractual rent per square foot as of the current period ended, or if rent has not yet commenced, the first monthly rent payment per square foot due at each rent commencement date, multiplied by 12 months as adjusted for straight line rent, fair-value lease revenue, and lease incentive revenue.

(2)
Adjustments to cash basis exclude adjustments to expenses accrued in rental operations, but include straight line rents, fair-value lease revenue, lease incentive revenue, bad debt expense and other revenue (including lease termination revenue).

The following table provides a reconciliation of net operating income - cash basis to net income for the three months ended June 30, 2012 and 2011 (dollars in thousands):

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Table of Contents

 
Three Months Ended
 
 
 
 
 
June 30,
 
 
 
Percent
 
2012
 
2011
 
Change
 
Change
Net operating income - cash basis
$
86,800

 
$
71,861

 
$
14,939

 
20.8
 %
Adjustments to cash basis
1,004

 
3,250

 
(2,246
)
 
(69.1
)%
Net operating income
87,804

 
75,111

 
12,693

 
16.9
 %
Unallocated income / (expense) :
 
 
 
 
 
 
 
Depreciation and amortization expense
47,575

 
35,696

 
11,879

 
33.3
 %
General and administrative expense
8,576

 
6,694

 
1,882

 
28.1
 %
Acquisition-related expenses
12,245

 
334

 
11,911

 
3,566.2
 %
Income from operations
19,408

 
32,387

 
(12,979
)
 
(40.1
)%
Equity in net loss of unconsolidated partnerships
(317
)
 
(466
)
 
149

 
(32.0
)%
Interest expense, net
(23,825
)
 
(23,378
)
 
(447
)
 
1.9
 %
Other expense
(549
)
 
(691
)
 
142

 
(20.5
)%
(Loss) / income from continuing operations
(5,283
)
 
7,852

 
(13,135
)
 
(167.3
)%
Income from discontinued operations
49

 
95

 
(46
)
 
(48.4
)%
Net (loss) / income
$
(5,234
)
 
$
7,947

 
$
(13,181
)
 
(165.9
)%

Net Operating Income. Net operating income increased $12.7 million to $87.8 million for the three months ended June 30, 2012 compared to $75.1 million for the three months ended June 30, 2011. This increase was due to the following:

The acquisition of properties totaling 708,185 square feet in 2011 and properties totaling 898,351 square feet in the six months ended June 30, 2012 contributed an additional $8.8 million in net operating income for the three months ended June 30, 2012 compared to the three months ended June 30, 2011.

The placement into service of a development property that was under development in 2011 totaling 176,000 square feet resulted in an increase of $1.6 million in net operating income for the three months ended June 30, 2012 compared to the three months ended June 30, 2011.

Same property net operating income increased $3.0 million to $78.3 million for the three months ended June 30, 2012 compared to $75.3 million for the three months ended June 30, 2011. This increase was primarily due to increased leasing activity in our same property portfolio during 2011 and 2012, which increased the leased percentage from 84.3% at June 30, 2011 to 87.5% at June 30, 2012, and resulted in the following:

An increase in the percentage of recoverable expenses in our same property portfolio to 86.1% for the three months ended June 30, 2012 compared to 80.8% for the three months ended June 30, 2011. This increase in the percentage of recoverable expenses contributed an additional $1.6 million in net operating income for the three months ended June 30, 2012.

An increase in rental revenue of $1.7 million directly attributable to the commencement of leases in our same property portfolio. On a GAAP basis, the current annualized base rent per square foot decreased to $37.44 at June 30, 2012 from $38.27 at June 30, 2011 due to lease up of previously vacant space at a lower average rent than our total overall portfolio on a per square foot basis.

These increases were partially offset by a decrease of $434,000 in other revenue which related to consideration received related to the sale of equipment at one of our properties during the three months ended June 30, 2011.

Depreciation and Amortization Expense. Depreciation and amortization expense increased $11.9 million to $47.6 million for the three months ended June 30, 2012 compared to $35.7 million for the three months ended June 30, 2011. The increase was primarily due to the acquisition of properties totaling 708,185 square feet with an acquisition date fair-value of $431.5 million in 2011 and properties totaling 898,351 square feet with an acquisition date fair-value of $410.1 million in the six months ended June 30, 2012.
General and Administrative Expenses. General and administrative expenses increased $1.9 million to $8.6 million for the three months ended June 30, 2012 compared to $6.7 million for the three months ended June 30, 2011. The increase was primarily due

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Table of Contents

to an increase in aggregate compensation costs due to higher headcount as compared to the prior year.
Acquisition-Related Expenses. Acquisition-related expenses increased to $12.2 million for the three months ended June 30, 2012 compared to $334,000 for the three months ended June 30, 2011. The increase was primarily due to a United Kingdom transfer tax assessed in connection with our purchase of Granta Park and an increase in acquisition activities in the three months ended June 30, 2012 as compared to the prior year period.
Equity in Net Loss of Unconsolidated Partnerships. Equity in net loss of unconsolidated partnerships decreased $149,000 to $317,000 for the three months ended June 30, 2012 compared to $466,000 for the three months ended June 30, 2011. The decreased loss primarily reflects our acquisition of PREI's interest in certain assets held by PREI I LLC in December 2011. Up to the date of the acquisition, our interest in the related assets was accounted for using the equity method of accounting. Since our acquisition of PREI's interest in December 2011, the related assets have been wholly-owned by us and consolidated within our financial statements.
Interest Expense, Net. Interest cost incurred for the three months ended June 30, 2012 totaled $25.9 million compared to $25.2 million for the three months ended June 30, 2011. Total interest cost incurred increased primarily as a result of higher average debt balances outstanding during 2012 and increases in the average interest rate on our outstanding borrowings due to the issuance of new variable-rate indebtedness, partially offset by the expiration of derivative instruments and repayment of certain higher coupon mortgage notes payable. Interest expense, net increased $447,000 to $23.8 million for the three months ended June 30, 2012 compared to $23.4 million for the three months ended June 30, 2011. Interest expense, net increased primarily as a result of the increase in interest cost incurred partially offset by an increase in capitalized interest.
Interest expense, net consisted of the following (in thousands):
 
Three Months Ended
 
June 30,
 
2012
 
2011
Mortgage notes payable
$
9,882

 
$
11,130

Amortization of debt premium on mortgage notes payable
(130
)
 
(427
)
Amortization of deferred interest costs (see Note 9)
1,736

 
1,760

Derivative instruments (see Note 9)
467

 
1,296

Unsecured term loan
1,911

 

Exchangeable senior notes
1,688

 
1,910

Unsecured senior notes
7,767

 
7,635

Amortization of debt discount on notes
173

 
259

Unsecured line of credit
235

 
246

Unsecured line of credit fees
663

 
233

Amortization of deferred loan fees
1,523

 
1,153

Interest cost incurred
25,915

 
25,195

Capitalized interest
(2,090
)
 
(1,817
)
Total interest expense, net
$
23,825

 
$
23,378


Other Expense. Other expense consisted of the following (in thousands):

 
Three Months Ended
 
June 30,
 
2012
 
2011
Gain / (loss) on extinguishment of debt
$
34

 
$
(249
)
Other-than-temporary impairment of marketable securities
(545
)
 
(825
)
Gain on derivative instruments

 
383

Foreign income tax expense
(38
)
 

Total other expense
$
(549
)
 
$
(691
)
During the three months ended June 30, 2012, we repaid in full the outstanding mortgage note totaling approximately $6.3

40

Table of Contents

million pertaining to the 6828 Nancy Ridge Drive property. This resulted in the recognition of a gain on extinguishment of debt representing the write-off of unamortized debt premium, partially offset by the write-off of deferred loan fees. During the three months ended June 30, 2011, we repaid in full the outstanding mortgage note totaling approximately $4.6 million pertaining to the Ardentech Court property, prior to its maturity date. The repayments resulted in the recognition of a loss on extinguishment of debt (representing a prepayment penalty and the write-off of deferred loan fees partially offset by the write off of unamortized debt premium). For both the three months ended June 30, 2012 and 2011, significant declines in the value of investments in available-for-sale securities in a publicly traded company we considered other-than-temporary resulted in the reclassification through net income of an unrealized loss from other comprehensive income. The loss on derivative instruments for the three months ended June 30, 2011 was due to an increase in our variable-rate indebtedness during the period, resulting in other comprehensive income being reclassified to the consolidated income statement due to mismatches in forecasted transactions on interest rate swaps. Foreign income tax expense relates to entity level income taxes on our Granta Park investment.
Income from Discontinued Operations. In April 2012, we completed the exchange of our Forbes Boulevard property and have reclassified the income and expense attributable to the Forbes Boulevard property to discontinued operations. Income from discontinued operations was approximately $49,000 and $95,000 for the three months ended June 30, 2012 and 2011, respectively.

Comparison of the Six Months Ended June 30, 2012 to the Six Months Ended June 30, 2011
The following table sets forth historical financial information of the continuing operations for same properties (all properties except properties held for sale, redevelopment/development, new properties, and corporate entities), redevelopment/development properties (properties that were entirely or primarily under redevelopment or development during either of the six months ended June 30, 2012 or 2011), new properties (properties that were not owned for each of the six months ended June 30, 2012 and 2011 and were not under redevelopment/development) and corporate entities (legal entities performing general and administrative functions and fees received from our PREI joint ventures) (dollars in thousands, except on a per square foot basis):
 
Same Properties
 
Redevelopment/Development
Properties
 
New Properties
 
Corporate
 
Total
 
June 30,
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
Rentable square feet
10,465,607

 
10,465,607

 
533,367

 
533,367

 
1,606,536

 

 
N/A

 
N/A

 
12,605,510

 
10,998,974

Percent of total portfolio
83.0
%
 
95.2
%
 
4.2
%
 
4.8
%
 
12.8
%
 
N/A

 
N/A

 
N/A

 
100.0
%
 
100.0
%
Percent leased
87.5
%
 
84.3
%
 
83.7
%
 
82.7
%
 
86.2
%
 
N/A

 
N/A

 
N/A

 
87.2
%
 
84.3
%
Current annualized base rent per square foot - GAAP basis (1)
$
37.44

 
$
38.27

 
$
34.68

 
$
34.80

 
$
44.22

 
N/A

 
N/A

 
N/A

 
$
38.19

 
$
38.10

 
Six Months Ended June 30,
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
 
2012
 
2011
Rental revenue
$
162,947

 
$
160,077

 
$
4,305

 
$
969

 
$
19,927

 
$

 
$
4

 
$
4

 
$
187,183

 
$
161,050

Tenant recoveries
49,913

 
48,433

 
579

 
187

 
6,758

 

 
140

 
644

 
57,390

 
49,264

Other income
161

 
1,280

 

 

 
7

 

 
117

 
8

 
285

 
1,288

Total revenues
213,021

 
209,790

 
4,884

 
1,156

 
26,692

 

 
261

 
656

 
244,858

 
211,602

Rental operations
57,987

 
59,637

 
763

 
345

 
11,413

 

 
3,610

 
2,389

 
73,773

 
62,371

Net operating income
155,034

 
150,153

 
4,121

 
811

 
15,279

 

 
(3,349
)
 
(1,733
)
 
171,085

 
149,231

Adjustments to cash basis (2)
(2,343
)
 
(5,217
)
 
(842
)
 
1

 
2,447

 

 
(117
)
 
(8
)
 
(855
)
 
(5,224
)
Net operating income - cash basis
$
152,691

 
$
144,936

 
$
3,279

 
$
812

 
$
17,726

 
$

 
$
(3,466
)
 
$
(1,741
)
 
$
170,230

 
$
144,007

____________


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Table of Contents

(1)
Current annualized base rent per square foot - GAAP basis is the monthly contractual rent per square foot as of the current period ended, or if rent has not yet commenced, the first monthly rent payment per square foot due at each rent commencement date, multiplied by 12 months as adjusted for straight line rent, fair-value lease revenue, and lease incentive revenue.

(2)
Adjustments to cash basis exclude adjustments to expenses accrued in rental operations, but include straight line rents, fair-value lease revenue, lease incentive revenue, bad debt expense and other revenue (including lease termination revenue).

The following table provides a reconciliation of net operating income - cash basis to net income for the six months ended June 30, 2012 and 2011 (dollars in thousands):
 
Six Months Ended
 
 
 
 
 
June 30,
 
 
 
Percent
 
2012
 
2011
 
Change
 
Change
Net operating income - cash basis
$
170,230

 
$
144,007

 
$
26,223

 
18.2
 %
Adjustments to cash basis
855

 
5,224

 
(4,369
)
 
(83.6
)%
Net operating income
171,085

 
149,231

 
21,854

 
14.6
 %
Unallocated income / (expense) :
 
 
 
 
 
 
 
Depreciation and amortization expense
92,508

 
69,447

 
23,061

 
33.2
 %
General and administrative expense
17,191

 
14,115

 
3,076

 
21.8
 %
Acquisition-related expenses
12,879

 
653

 
12,226

 
1,872.3
 %
Income from operations
48,507

 
65,016

 
(16,509
)
 
(25.4
)%
Equity in net loss of unconsolidated partnerships
(671
)
 
(1,115
)
 
444

 
(39.8
)%
Interest expense, net
(46,044
)
 
(44,568
)
 
(1,476
)
 
3.3
 %
Other expense
(375
)
 
(1,745
)
 
1,370

 
(78.5
)%
Income from continuing operations
1,417

 
17,588

 
(16,171
)
 
(91.9
)%
(Loss) / income from discontinued operations
(4,370
)
 
236

 
(4,606
)
 
(1,951.7
)%
Net (loss) / income
$
(2,953
)
 
$
17,824

 
$
(20,777
)
 
(116.6
)%

Net Operating Income. Net operating income increased $21.9 million to $171.1 million for the six months ended June 30, 2012 compared to $149.2 million for the six months ended June 30, 2011. This increase was due to the following:

The acquisition of properties totaling 708,185 square feet in 2011 and properties totaling 898,351 square feet in the six months ended June 30, 2012 contributed an additional $15.3 million in net operating income for the six months ended June 30, 2012 compared to the six months ended June 30, 2011.

The placement into service of a development property that was under development in 2011 totaling 176,000 square feet resulted in an increase of $3.3 million in net operating income for the six months ended June 30, 2012 compared to the six months ended June 30, 2011.

Same property net operating income increased $4.8 million to $155.0 million for the six months ended June 30, 2012 compared to $150.2 million for the six months ended June 30, 2011. This increase was primarily due to increased leasing activity in our same property portfolio during 2011 and 2012, which increased the leased percentage from 84.3% at June 30, 2011 to 87.5% at June 30, 2012, and resulted in the following:

An increase in the percentage of recoverable expenses in our same property portfolio to 86.1% for the six months ended June 30, 2012 compared to 81.2% for the six months ended June 30, 2011. This increase in the percentage of recoverable expenses contributed an additional $3.1 million in net operating income for the six months ended June 30, 2012.

An increase in rental revenue of $2.8 million directly attributable to the commencement of leases in our same property portfolio. On a GAAP basis, the current annualized base rent per square foot decreased to $37.44 at June 30, 2012 from $38.27 at June 30, 2011 due to lease up of previously vacant space at a lower average rent than our total overall portfolio on a per square foot basis.

42

Table of Contents


These increases were partially offset by a decrease of $1.1 million in other revenue which related to lease termination payments received and consideration received related to the sale of equipment at one of our properties during the six months ended June 30, 2011. On an ongoing basis, we evaluate the credit quality of our tenants. Factors we consider as part of this evaluation include, among other things, the financial strength of the tenant and any guarantors, a review of publicly filed documents and analyst research reports (as a majority of our tenants are public companies), a review of the tenant's cash balance and estimated cash “burn” rate if the tenant's cash flow from operations is negative, and the tenant's payment history. During the six months ended June 30, 2012, based on management's review, there have been no changes in tenant credit quality that have had or are expected to have a material impact on our consolidated financial statements.

Depreciation and Amortization Expense. Depreciation and amortization expense increased $23.1 million to $92.5 million for the six months ended June 30, 2012 compared to $69.4 million for the six months ended June 30, 2011. The increase was primarily due to the acquisition of properties totaling 708,185 square feet with an acquisition date fair-value of $431.5 million in 2011 and properties totaling 898,351 square feet with an acquisition date fair-value of $410.1 million in the six months ended June 30, 2012.
General and Administrative Expenses. General and administrative expenses increased $3.1 million to $17.2 million for the six months ended June 30, 2012 compared to $14.1 million for the six months ended June 30, 2011. The increase was primarily due to an increase in aggregate compensation costs due to higher headcount as compared to the prior year.
Acquisition-Related Expenses. Acquisition-related expenses increased to $12.9 million for the six months ended June 30, 2012 compared to $653,000 for the six months ended June 30, 2011. The increase was primarily due to a United Kingdom transfer tax assessed in connection with our purchase of Granta Park and an increase in acquisition activities in the six months ended June 30, 2012 as compared to the prior year period.
Equity in Net Loss of Unconsolidated Partnerships. Equity in net loss of unconsolidated partnerships decreased $444,000 to $671,000 for the six months ended June 30, 2012 compared to $1.1 million for the six months ended June 30, 2011. The decreased loss primarily reflects our acquisition of PREI's interest in certain assets held by PREI I LLC in December 2011. Up to the date of the acquisition, our interest in the related assets was accounted for using the equity method of accounting. Since our acquisition of PREI's interest in December 2011, the related assets have been wholly-owned by us and consolidated within our financial statements.
Interest Expense, Net. Interest cost incurred for the six months ended June 30, 2012 totaled $50.5 million compared to $47.9 million for the six months ended June 30, 2011. Total interest cost incurred increased primarily as a result of higher average debt balances outstanding during 2012 and increases in the average interest rate on our outstanding borrowings due to the issuance of new indebtedness with a higher interest rate than the variable-rate indebtedness it replaced, partially offset by the expiration of derivative instruments and repayment of certain higher coupon mortgage notes payable. Interest expense, net increased $1.4 million to $46.0 million for the six months ended June 30, 2012 compared to $44.6 million for the six months ended June 30, 2011. Interest expense, net increased primarily as a result of the increase in interest cost incurred partially offset by an increase in capitalized interest.
Interest expense, net consisted of the following (in thousands):

43

Table of Contents

 
Six Months Ended
 
June 30,
 
2012
 
2011
Mortgage notes payable
$
20,157

 
$
22,507

Amortization of debt premium on mortgage notes payable
(361
)
 
(924
)
Amortization of deferred interest costs (see Note 9)
3,479

 
3,525

Derivative instruments (see Note 9)
477

 
2,941

Unsecured term loan
1,953

 

Exchangeable senior notes
3,375

 
3,821

Unsecured senior notes
15,445

 
11,549

Amortization of debt discount on notes
341

 
399

Unsecured line of credit
1,545

 
1,510

Unsecured line of credit fees
1,326

 
340

Amortization of deferred loan fees
2,757

 
2,211

Interest cost incurred
50,494

 
47,879

Capitalized interest
(4,450
)
 
(3,311
)
Total interest expense, net
$
46,044

 
$
44,568


Other Expense. Other expense consisted of the following (in thousands):
 
Six Months Ended
 
June 30,
 
2012
 
2011
Gain / (loss) on extinguishment of debt
$
216

 
$
(292
)
Other-than-temporary impairment of marketable securities
(545
)
 
(825
)
Loss on derivative instruments
(8
)
 
(628
)
Foreign income tax expense
(38
)
 

Total other expense
$
(375
)
 
$
(1,745
)
During the six months ended June 30, 2012, we repaid in full the outstanding mortgage notes totaling approximately $32.5 million pertaining to the Sidney Street and 6828 Nancy Ridge Drive properties. This resulted in the recognition of a gain on extinguishment of debt representing the write-off of unamortized debt premium, partially offset by the write-off of deferred loan fees. During the six months ended June 30, 2011, we repaid in full the outstanding mortgage notes totaling approximately $30.1 million pertaining to the Road to the Cure, 10255 Science Center Drive and Ardentech Court properties. The repayments resulted in the recognition of a loss on extinguishment of debt (representing prepayment penalties and the write-off of deferred loan fees partially offset by the write off of unamortized debt premiums). For both the six months ended June 30, 2012 and 2011, significant declines in the value of investments in available-for-sale securities in a publicly traded company we considered other-than-temporary resulted in the reclassification of an unrealized loss from other comprehensive income. The loss on derivative instruments for the six months ended June 30, 2012 relates to decreases in the value of warrants held, and the loss on derivative instruments for the six months ended June 30, 2011 reflects hedging ineffectiveness associated with certain interest rate derivative contracts. Foreign income tax expense relates to entity level income taxes on our Granta Park investment.
(Loss) / Income from Discontinued Operations. In April 2012, we completed the exchange of our Forbes Boulevard property and have reclassified the income and expense attributable to the Forbes Boulevard property to discontinued operations. Loss from discontinued operations was approximately $4.4 million for the six months ended June 30, 2012 due to an impairment loss that was recorded, as the carrying value of the property exceeded the value of the consideration we received when the property was disposed. Income from discontinued operations was approximately of $236,000 for the six months ended June 30, 2011.
Cash Flows
Comparison of the Six Months Ended June 30, 2012 to the Six Months Ended June 30, 2011

44

Table of Contents

 
2012
 
2011
 
Change
 
(In thousands)
Net cash provided by operating activities
$
108,118

 
$
81,772

 
$
26,346

Net cash used in investing activities
(450,952
)
 
(122,568
)
 
(328,384
)
Net cash provided by financing activities
343,738

 
31,362

 
312,376

Ending cash and cash equivalents balance
17,385

 
12,033

 
5,352


Net cash provided by operating activities increased $26.3 million to $108.1 million for the six months ended June 30, 2012 compared to $81.8 million for the six months ended June 30, 2011. The increase was primarily due to cash flow generated by acquisitions and cash rent starts on new leases.

Net cash used in investing activities increased $328.4 million to $451.0 million for the six months ended June 30, 2012 compared to $122.6 million for the six months ended December 31, 2011. The increase reflects increased acquisition activity during the six months ended June 30, 2012 compared to the six months ended June 30, 2011.

Net cash provided by financing activities increased $312.3 million to $343.7 million for the six months ended June 30, 2012 compared to $31.4 million for the six months ended June 30, 2011. The increase primarily reflects increased financing requirements due to increased acquisition activity during the six months ended June 30, 2012 compared to the six months ended June 30, 2011. The proceeds from the issuances of our Term Loan in March 2012 and Notes due 2022 in June 2012 were primarily used to repay balances due under our unsecured line of credit and mortgage notes payable. The proceeds from the issuance of our Notes due 2016 in March 2011 were primarily used to repay balances due under our unsecured line of credit and mortgage notes payable.

Funds from Operations

We present funds from operations, or FFO, and FFO excluding acquisition-related expenses, or Core FFO, available to common shares and OP units because we consider them to be important supplemental measures of our operating performance and believe it is frequently used by securities analysts, investors and other interested parties in the evaluation of REITs, many of which present FFO and Core FFO when reporting their results. FFO and Core FFO are intended to exclude GAAP historical cost depreciation and amortization of real estate and related assets, which assumes that the value of real estate assets diminishes ratably over time. Historically, however, real estate values have risen or fallen with market conditions. Because FFO and Core FFO exclude depreciation and amortization unique to real estate, gains and losses from depreciable property dispositions and extraordinary items, it provides a performance measure that, when compared year over year, reflects the impact to operations from trends in occupancy rates, rental rates, operating costs, development activities and interest costs, providing perspective not immediately apparent from net income. We compute FFO in accordance with standards established by the Board of Governors of the National Association of Real Estate Investment Trusts, or NAREIT. As defined by NAREIT, FFO represents net income (computed in accordance with GAAP), excluding gains (or losses) from sales of depreciable property, impairment charges on depreciable real estate, real estate related depreciation and amortization (excluding amortization of loan origination costs) and after adjustments for unconsolidated partnerships and joint ventures. Our computations may differ from the methodologies for calculating FFO and Core FFO utilized by other equity REITs and, accordingly, may not be comparable to such other REITs. Further, FFO and Core FFO do not represent amounts available for management's discretionary use because of needed capital replacement or expansion, debt service obligations, or other commitments and uncertainties. FFO and Core FFO should not be considered alternatives to net income / (loss) (computed in accordance with GAAP) as an indicator of our financial performance or to cash flow from operating activities (computed in accordance with GAAP) as an indicator of our liquidity, nor is it indicative of funds available to fund our cash needs, including our ability to pay dividends or make distributions.
Our FFO and Core FFO available to common shares and OP units and a reconciliation to net income for the three and six months ended June 30, 2012 and 2011 (in thousands, except per share and share data) were as follows:

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Three Months Ended
 
Six Months Ended
 
June 30,
 
June 30,
 
2012
 
2011
 
2012
 
2011
Net (loss) / income available to the common stockholders
$
(8,713
)
 
$
3,638

 
$
(10,053
)
 
$
9,168

Adjustments:
 
 
 
 
 
 
 
Impairment loss

 

 
4,552

 

Noncontrolling interests in operating partnership(1)
(166
)
 
82

 
(192
)
 
207

Depreciation and amortization - unconsolidated partnerships
323

 
944

 
645

 
1,865

Depreciation and amortization - consolidated entities
47,575

 
35,696

 
92,508

 
69,447

Depreciation and amortization - discontinued operations

 
92

 
92

 
178

Depreciation and amortization - allocable to noncontrolling interest of consolidated joint ventures
(27
)
 
(26
)
 
(55
)
 
(52
)
Funds from operations available to common shares and units - basic
38,992

 
40,426

 
87,497

 
80,813

Interest expense on Exchangeable Senior Notes(2)
1,688

 
1,688

 
3,375

 
3,375

Funds from operations available to common shares and units - diluted
40,680

 
42,114

 
90,872

 
84,188

Acquisition related expenses
12,245

 
334

 
12,879

 
653

Core funds from operations - diluted
$
52,925

 
$
42,448

 
$
103,751

 
$
84,841

Core funds from operations per share - diluted
$
0.32

 
$
0.29

 
$
0.62

 
$
0.59

Weighted-average common shares and units outstanding - diluted(2) (3)
167,238,695

 
144,254,164

 
167,237,418

 
144,262,597

____________
(1)
Net income allocable to noncontrolling interests in the operating partnership is included in net income available to unitholders of the operating partnership as reflected in the consolidated financial statements of BioMed Realty, L.P., included elsewhere herein.
(2)
Reflects interest expense adjustment of the Exchangeable Senior Notes based on the “if converted” method. Both the three and six months ended June 30, 2012 include 10,127,232 shares of common stock potentially issuable pursuant to the exchange feature of the Exchangeable Senior Notes based on the “if converted” method, respectively. Both the three and six months ended June 30, 2011 include 10,017,858 shares of common stock potentially issuable pursuant to the exchange feature of the Exchangeable Senior Notes based on the “if converted” method, respectively.
(3)
The three and six months ended June 30, 2012 includes 2,947,140 and 2,956,543 shares of OP and LTIP units, which are considered anti-dilutive for purposes of calculating diluted earnings per share, respectively. The three and six months ended June 30, 2012 include 1,388,901 and 1,437,928 shares of unvested restricted stock, which are considered anti-dilutive for purposes of calculating diluted earnings per share, respectively. The three and six months ended June 30, 2011 include 1,395,374 and 1,441,642 shares of unvested restricted stock, which are considered anti-dilutive for purposes of calculating diluted earnings per share, respectively.

Liquidity and Capital Resources of BioMed Realty Trust, Inc.
In this “Liquidity and Capital Resources of BioMed Realty Trust, Inc.” section, the term the “Company” refers only to BioMed Realty Trust, Inc. on an unconsolidated basis, and excludes the operating partnership and all other subsidiaries. For further discussion of the liquidity and capital resources of the Company on a consolidated basis, see the section entitled “Liquidity and Capital Resources of BioMed Realty, L.P.” below.
The Company's business is operated primarily through the operating partnership. The Company issues public equity from time to time, but does not otherwise generate any capital itself or conduct any business itself, other than incurring certain expenses in operating as a public company which are fully reimbursed by the operating partnership. The Company itself does not hold any indebtedness, and its only material asset is its ownership of partnership interests of the operating partnership. The Company's

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principal funding requirement is the payment of dividends on its common and preferred shares. The Company's principal source of funding for its dividend payments is distributions it receives from the operating partnership.
As of June 30, 2012, the Company owned an approximate 98.1% partnership interest and other limited partners, including some of our directors, executive officers and their affiliates, owned the remaining 1.9% partnership interest (including LTIP units) in the operating partnership. As the sole general partner of the operating partnership, BioMed Realty Trust, Inc. has the full, exclusive and complete responsibility for the operating partnership's day-to-day management and control.
The liquidity of the Company is dependent on the operating partnership's ability to make sufficient distributions to the Company. The primary cash requirement of the Company is its payment of dividends to its stockholders. The Company also guarantees some of the operating partnership's debt, as discussed further in Note 5 of the Notes to Consolidated Financial Statements included elsewhere herein. If the operating partnership fails to fulfill certain of its debt requirements, which trigger the Company's guarantee obligations, then the Company will be required to fulfill its cash payment commitments under such guarantees. However, the Company's only significant asset is its investment in the operating partnership.
We believe the operating partnership's sources of working capital, specifically its cash flow from operations, and borrowings available under its unsecured line of credit, are adequate for it to make its distribution payments to the Company and, in turn, for the Company to make its dividend payments to its stockholders. However, we cannot assure you that the operating partnership's sources of capital will continue to be available at all or in amounts sufficient to meet its needs, including its ability to make distribution payments to the Company. The unavailability of capital could adversely affect the operating partnership's ability to pay its distributions to the Company, which would in turn, adversely affect the Company's ability to pay cash dividends to its stockholders.
Our short-term liquidity requirements consist primarily of funds to pay for future dividends expected to be paid to the Company's stockholders, operating expenses and other expenditures directly associated with our properties, interest expense and scheduled principal payments on outstanding indebtedness, general and administrative expenses, construction projects, capital expenditures, tenant improvements and leasing commissions.

The Company may from time to time seek to repurchase or redeem the operating partnership's outstanding debt, the Company's shares of common stock or preferred stock or other securities in open market purchases, privately negotiated transactions or otherwise. Such repurchases or redemptions, if any, will depend on prevailing market conditions, our liquidity requirements, contractual restrictions and other factors. The amounts involved may be material.
For the Company to maintain its qualification as a REIT, it must pay dividends to its stockholders aggregating annually at least 90% of its ordinary taxable income. While historically the Company has satisfied this distribution requirement by making cash distributions to its stockholders, it may choose to satisfy this requirement by making distributions of cash or other property, including, in limited circumstances, the Company's own stock. As a result of this distribution requirement, the operating partnership cannot rely on retained earnings to fund its ongoing operations to the same extent that other companies whose parent companies are not REITs can. The Company may need to continue to raise capital in the equity markets to fund the operating partnership's working capital needs, acquisitions and developments.
The Company is a well-known seasoned issuer with an effective shelf registration statement which was amended in November 2010 that allows the Company to register an unspecified amount of various classes of equity securities and the operating partnership to register an unspecified amount of various classes of debt securities. As circumstances warrant, the Company may issue equity from time to time on an opportunistic basis, dependent upon market conditions and available pricing. When the Company receives proceeds from preferred or common equity issuances, it is required by the operating partnership's partnership agreement to contribute the proceeds from its equity issuances to the operating partnership in exchange for preferred or partnership units of the operating partnership. The operating partnership may use the proceeds to repay debt, including borrowings under its unsecured line of credit, develop new or existing properties, acquire properties, or for general corporate purposes.
Liquidity and Capital Resources of BioMed Realty, L.P.
In this “Liquidity and Capital Resources of BioMed Realty, L.P.” section, the terms “we,” “our” and “us” refer to the operating partnership together with its consolidated subsidiaries or our operating partnership and BioMed Realty Trust, Inc. together with their consolidated subsidiaries, as the context requires. BioMed Realty Trust, Inc., or our Parent Company, is our sole general partner and consolidates our results of operations for financial reporting purposes. Because we operate on a consolidated basis with our Parent Company, the section entitled “Liquidity and Capital Resources of BioMed Realty Trust, Inc.” should be read in conjunction with this section to understand our liquidity and capital resources on a consolidated basis.
Our short-term liquidity requirements consist primarily of funds to pay for future dividends expected to be paid to our Parent

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Company's stockholders, operating expenses and other expenditures directly associated with our properties, interest expense and scheduled principal payments on outstanding indebtedness, general and administrative expenses, construction projects, capital expenditures, tenant improvements and leasing commissions.
The remaining principal payments due for our consolidated and our proportionate share of unconsolidated indebtedness (excluding debt premiums and discounts) as of June 30, 2012 were as follows (in thousands):
 
2012
 
2013
 
2014
 
2015
 
2016
 
Thereafter
 
Total
Consolidated indebtedness:
 
 
 
 
 
 
 
 
 
 
 
 
 
Fixed-rate mortgages
$
3,922

 
$
8,291

 
$
339,020

 
$
6,253

 
$
143,426

 
$
47,109

 
$
548,021

Unsecured line of credit

 

 

 
78,000

 

 

 
78,000

Unsecured senior term loan

 

 

 

 

 
400,000

 
400,000

Exchangeable Senior Notes

 

 

 

 

 
180,000

 
180,000

Notes due 2016

 

 

 

 
400,000

 

 
400,000

Notes due 2020

 

 

 

 

 
250,000

 
250,000

Notes due 2022

 

 

 

 

 
250,000

 
250,000

Total consolidated indebtedness
3,922

 
8,291

 
339,020

 
84,253

 
543,426

 
1,127,109

 
2,106,021

Share of unconsolidated indebtedness:
 
 
 
 
 
 
 
 
 
 
 
 
 
Secured construction loan

 
27,795

 

 

 

 

 
27,795

Total share of unconsolidated indebtedness

 
27,795

 

 

 

 

 
27,795

Total indebtedness
$
3,922

 
$
36,086

 
$
339,020

 
$
84,253

 
$
543,426

 
$
1,127,109

 
$
2,133,816

There are no consolidated debt maturities until 2014, which includes the $340.3 million mortgage loan secured by our Center for Life Science | Boston property. This mortgage loan includes a financial covenant relating to a minimum amount of net worth. Management believes that it was in compliance with this covenant as of June 30, 2012.

The terms of the indentures governing the Notes due 2016, Notes due 2020 and Notes due 2022 require compliance with various financial covenants, including limits on the amount of total leverage and secured debt maintained by us and which require us to maintain minimum levels of debt service coverage. Management believes that it was in compliance with these covenants as of June 30, 2012.

On March 30, 2012, we entered into the Term Loan with KeyBank National Association, as administrative agent, and certain other lenders, providing for borrowings to us of $400.0 million.
The Term Loan and the credit agreement governing our unsecured line of credit include certain restrictions and covenants which require compliance with financial covenants relating to the minimum amounts of net worth, fixed charge coverage, unsecured debt service coverage, overall leverage and unsecured leverage ratios, the maximum amount of secured indebtedness and certain investment limitations. Management believes that it was in compliance with these covenants as of June 30, 2012.

On June 28, 2012, we issued $250.0 million principal amount of our Notes due 2022, which are governed by a base indenture and supplemental indenture, dated March 30, 2011 and June 28, 2012, respectively, among us, as issuer, our Parent Company, as guarantor, and U.S. Bank National Association, as trustee.
Our long-term liquidity requirements consist primarily of funds to pay for scheduled debt maturities, construction obligations, renovations, expansions, capital commitments and other non-recurring capital expenditures that need to be made periodically, and the costs associated with acquisitions of properties that we pursue. At June 30, 2012, we had acquired a participating interest in a construction loan and entered into construction contracts and lease agreements, with a remaining commitment totaling approximately $346.0 million related to the construction loan funding, tenant improvements, leasing commissions and construction-related capital expenditures, of which $99.5 million are expected to be paid in 2012, and $246.5 million are expected to be paid in 2013 or thereafter.
We expect to satisfy our short-term liquidity requirements through our existing working capital and cash provided by our operations, long-term secured and unsecured indebtedness, the issuance of additional equity or debt securities and the use of net proceeds from the disposition of non-strategic assets. Our rental revenues, provided by our leases, generally provide cash inflows to meet our debt service obligations, pay general and administrative expenses, and fund regular distributions. We expect to satisfy our long-term liquidity requirements through our existing working capital, cash provided by operations, long-term secured and

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unsecured indebtedness and the issuance of additional equity or debt securities. We also expect to use funds available under our unsecured line of credit to finance acquisition and development activities and capital expenditures on an interim basis. In addition, we have an investment grade rating, which we believe will provide us with continued access to the unsecured debt markets, providing us with an additional source of long term financing.
BioMed Realty Trust, Inc.'s total capitalization at June 30, 2012 was approximately $5.2 billion and comprised the following:
 
Shares/Units at
 
Aggregate Principal
Amount or
Dollar Value Equivalent
 
Percent of Total Capitalization
 
June 30,
2012
 
 
 
(In thousands)
Debt:
 
 
 
 
 
Mortgage notes payable(1)
 
 
$
548,021

 
10.5
%
Exchangeable Senior Notes
 
 
180,000

 
3.4
%
Notes due 2016(1)
 
 
400,000

 
7.6
%
Notes due 2020(1)
 
 
250,000

 
4.8
%
Notes due 2022(1)
 
 
250,000

 
4.8
%
Unsecured senior term loan
 
 
400,000

 
7.6
%
Unsecured line of credit
 
 
78,000

 
1.5
%
Total debt
 
 
2,106,021

 
40.2
%
Equity:
 
 
 
 
 
Common shares, operating partnership and LTIP units outstanding(2)
157,126,502

 
2,935,122

 
56.0
%
7.375% Series A Preferred shares outstanding(3)
7,920,000

 
198,000

 
3.8
%
Total capital
 
 
3,133,122

 
59.8
%
Total capitalization
 
 
$
5,239,143

 
100.0
%
____________
(1)
Amounts exclude unamortized debt premiums and unamortized debt discounts.
(2)
Aggregate amount based on the market closing price of the common stock of our Parent Company of $18.68 per share on the last trading day of the quarter (June 29, 2012). Limited partners who have been issued OP units have the right to require the operating partnership to redeem part or all of their OP units, which right with respect to LTIP units is subject to vesting and the satisfaction of other conditions. We may elect to acquire those OP units in exchange for shares of our Parent Company's common stock on a one-for-one basis, subject to adjustment. At June 30, 2012, 154,183,744 of the outstanding OP units had been issued to our Parent Company upon receipt of the net proceeds from the issuance of an equal number of shares of our Parent Company's common stock.
(3)
Based on the liquidation preference of $25.00 per share of our Parent Company's 7.375% Series A preferred stock (we have issued a corresponding number of 7.375% Series A preferred units).
Although our organizational documents do not limit the amount of indebtedness that we may incur, our Parent Company's board of directors has adopted a policy of targeting our indebtedness at approximately 50% of our total asset book value. At June 30, 2012, the ratio of debt to total asset book value was approximately 43.9%. However, our Parent Company's board of directors may from time to time modify our debt policy in light of current economic or market conditions including, but not limited to, the relative costs of debt and equity capital, market conditions for debt and equity securities and fluctuations in the market price of our Parent Company's common stock. Accordingly, we may increase or decrease our debt to total asset book value ratio beyond the limit described above. In addition, the terms of the indentures governing our Notes due 2016, Notes due 2020 and Notes due 2022, the Term Loan credit facility and the credit agreement governing our unsecured line of credit require compliance with various financial covenants and ratios, which are discussed in detail above and in Note 5 in the Notes to Consolidated Financial Statements contained elsewhere herein.
We may from time to time seek to repurchase or redeem our outstanding debt, OP units or preferred units (subject to the repurchase or redemption of an equivalent number of shares of common stock or preferred stock by our Parent Company) or other securities, and our Parent Company may seek to repurchase or redeem its outstanding shares of common stock or preferred stock or other securities, in each case in open market purchases, privately negotiated transactions or otherwise. Such repurchases or

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redemptions, if any, will depend on prevailing market conditions, our liquidity requirements, contractual restrictions and other factors.
Off-Balance Sheet Arrangements
As of June 30, 2012, we had investments in the following unconsolidated partnerships: (1) McKellar Court limited partnership, which owns a single tenant occupied property located in San Diego; and (2) two limited liability companies with PREI, which own a portfolio of properties located in Cambridge, Massachusetts (see Note 8 of the Notes to Consolidated Financial Statements included elsewhere herein for more information).
The McKellar Court partnership is a VIE; however, we are not the primary beneficiary. The limited partner at McKellar Court is the only tenant in the property and will bear a disproportionate amount of any losses. We, as the general partner, will receive 22% of the operating cash flows and 75% of the gains upon sale of the property. We account for our general partner interest using the equity method. The assets of the McKellar Court partnership were $14.2 million and $14.4 million and the liabilities were $10.5 million and $10.5 million at June 30, 2012 and December 31, 2011, respectively. Our equity in net income of the McKellar Court partnership was $455,000 and $453,000 for the six months ended June 30, 2012 and 2011, respectively. In December 2009, we provided funding in the form of a promissory note to the McKellar Court partnership in the amount of $10.3 million, which matures at the earlier of (1) January 1, 2020, or (2) the day that the limited partner exercises an option to purchase our ownership interest. Interest-only payments on the promissory note are due monthly at a fixed rate of 8.15% (the rate may adjust higher after January 1, 2015), with the principal balance outstanding due at maturity.
PREI II LLC is a VIE; however, we are not the primary beneficiary. PREI will bear the majority of any losses incurred. PREI I LLC does not qualify as a VIE. In addition, consolidation is not required as we do not control the limited liability companies. In connection with the formation of the PREI joint ventures in April 2007, we contributed 20% of the initial capital. However, the amount of cash flow distributions that we receive may be more or less based on the nature of the circumstances underlying the cash distributions due to provisions in the operating agreements governing the distribution of funds to each member and the occurrence of extraordinary cash flow events. We account for our member interests using the equity method for both limited liability companies. The assets of the PREI joint ventures were $247.2 million and $249.7 million at June 30, 2012 and December 31, 2011, respectively, and the liabilities were $141.4 million and $140.2 million at June 30, 2012 and December 31, 2011, respectively. Our equity in net loss of the PREI joint ventures was $1.1 million and $1.6 million for the six months ended June 30, 2012 and 2011, respectively.
We are the primary beneficiary in six other VIEs, consisting of single-tenant properties in which the tenant has a fixed-price purchase option, which are consolidated and reflected in our consolidated financial statements.
Our proportionate share of outstanding debt related to our unconsolidated partnerships is summarized below (dollars in thousands):
 
 
 
 
 
 
Principal Amount(1)
 
 
Name
 
Ownership
Percentage
 
Interest Rate(2)
 
June 30,
2012
 
December 31,
2011
 
Maturity Date
PREI I LLC(3)
 
20
%
 
3.3
%
 
$
27,795

 
$
27,795

 
August 13, 2013
Total
 
 
 
 
 
$
27,795

 
$
27,795

 
 
____________
(1)
Amount represents our proportionate share of the total outstanding indebtedness for each of the unconsolidated partnerships.
(2)
Effective or weighted-average interest rate of the outstanding indebtedness as of June 30, 2012.
(3)
Amount represents our proportionate share of a secured loan, which bears interest at a LIBOR-indexed variable rate with a borrowing capacity of up to $139.0 million. The secured loan was executed by a wholly owned subsidiary of PREI I LLC in connection with the construction of the 650 East Kendall Street property. In accordance with the loan agreement, Prudential Insurance Corporation of America has guaranteed repayment of the secured loan.


Cash Distribution Policy

We elected to be taxed as a REIT under the Internal Revenue Code of 1986, as amended, or the Code, commencing with our taxable year ended December 31, 2004. To qualify as a REIT, we must meet a number of organizational and operational requirements,

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including the requirement that we distribute currently at least 90% of our ordinary taxable income to our stockholders. It is our intention to comply with these requirements and maintain our REIT status. As a REIT, we generally will not be subject to corporate federal, state or local income taxes on taxable income we distribute currently (in accordance with the Code and applicable regulations) to our stockholders. If we fail to qualify as a REIT in any taxable year, we will be subject to federal, state and local income taxes at regular corporate rates and may not be able to qualify as a REIT for subsequent tax years. Even if we qualify as a REIT for federal income tax purposes, we may be subject to certain state and local taxes on our income and to federal income and excise taxes on our undistributed taxable income, i.e., taxable income not distributed in the amounts and in the time frames prescribed by the Code and applicable regulations thereunder.

While we most recently paid a dividend on shares of common stock at an annual dividend rate of $0.86 per share, the actual dividend payable in the future will be determined by our board of directors based upon the circumstances at the time of declaration and, as a result, the actual dividend payable in the future may vary from the current rate. The decision to declare and pay dividends on shares of our common stock in the future, as well as the timing, amount and composition of any such future dividends, will be at the sole discretion of our board of directors in light of conditions then existing, including our earnings, financial condition, capital requirements, debt maturities, the availability of debt and equity capital, applicable REIT and legal restrictions and the general overall economic conditions and other factors.

The following table provides historical dividend information for our common and preferred stock for the prior two fiscal years and the six months ended June 30, 2012:
Quarter Ended
 
Date Declared
 
Date Paid
 
Dividend
per Common Share
 
Dividend
per Preferred Share
March 31, 2010
 
March 15, 2010
 
April 15, 2010
 
$
0.140

 
$
0.46094

June 30, 2010
 
June 15, 2010
 
July 15, 2010
 
0.150

 
0.46094

September 30, 2010
 
September 15, 2010
 
October 15, 2010
 
0.170

 
0.46094

December 31, 2010
 
December 15, 2010
 
January 17, 2011
 
0.170

 
0.46094

March 31, 2011
 
March 14, 2011
 
April 15, 2011
 
0.200

 
0.46094

June 30, 2011
 
June 15, 2011
 
July 15, 2011
 
0.200

 
0.46094

September 30, 2011
 
September 15, 2011
 
October 17, 2011
 
0.200

 
0.46094

December 31, 2011
 
December 14, 2011
 
January 17, 2012
 
0.200

 
0.46094

March 31, 2012
 
March 15, 2012
 
April 16, 2012
 
0.215

 
0.46094

June 30, 2012
 
June 15, 2012
 
July 16, 2012
 
0.215

 
0.46094


Inflation
Some of our leases contain provisions designed to mitigate the adverse impact of inflation. These provisions generally increase rental rates during the terms of the leases either at fixed rates or indexed escalations (based on the Consumer Price Index or other measures). We may be adversely impacted by inflation on the leases that do not contain indexed escalation provisions. In addition, most of our leases require the tenant to pay an allocable share of operating expenses, including common area maintenance costs, real estate taxes and insurance. This may reduce our exposure to increases in costs and operating expenses resulting from inflation, assuming our properties remain leased and tenants fulfill their obligations to reimburse us for such expenses.
Portions of our unsecured line of credit bear interest at a variable rate, which will be influenced by changes in short-term interest rates, and will be sensitive to inflation.

ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK
Our future income, cash flows and fair-values relevant to financial instruments depend upon prevailing market interest rates. Market risk is the exposure to loss resulting from changes in interest rates, foreign currency exchange rates, commodity prices and equity prices. Many factors, including governmental monetary and tax policies, domestic and international economic and political considerations and other factors that are beyond our control contribute to interest rate risk, equity price risk, and foreign currency exchange rate risk.
Interest rate risk
As of June 30, 2012, our consolidated debt consisted of the following (dollars in thousands):

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Effective Interest
 
 
 
Percent of
 
Rate at
 
Principal Balance (1)
 
Total Debt
 
June 30, 2012
Fixed interest rate (2)
$
1,624,441

 
77.3
%
 
5.39
%
Variable interest rate (3)
478,000

 
22.7
%
 
1.88
%
Total/weighted-average effective interest rate
$
2,102,441

 
100.0
%
 
4.59
%
(1)
Principal balance includes only consolidated indebtedness.
(2)
Includes four mortgage notes payable secured by certain of our properties (including unamortized premiums), our Exchangeable Senior Notes, our Notes due 2016 (including unamortized debt discount), our Notes due 2020 (including unamortized debt discount) and our Notes due 2022 (including unamortized debt discount).
(3)
Includes our Term Loan and our unsecured line of credit, which bear interest at a LIBOR-indexed variable interest rate, plus a credit spread. The stated effective rate for the variable interest debt excludes the impact of any interest rate swap agreements. We have entered into four interest rate swaps, which are intended to have the effect of initially fixing the interest rate on $200.0 million of the outstanding amount under our Term Loan at a weighted-average interest rate of approximately 2.81% (including applicable credit spreads for the underlying debt), subject to adjustment based on our credit ratings.
To determine the fair-value of our outstanding consolidated indebtedness, we utilize quoted market prices to estimate the fair-value, when available. If quoted market prices are not available, we calculate the fair-value of our mortgage notes payable and other fixed-rate debt based on an estimate of current lending rates, assuming the debt is outstanding through maturity and considering the notes’ collateral. In determining the current market rate for fixed-rate debt, a market credit spread is added to the quoted yields on federal government treasury securities with similar terms to debt. In determining the current market rate for variable-rate debt, a market credit spread is added to the current effective interest rate. At June 30, 2012, the fair-value of the fixed-rate debt was estimated to be $1.8 billion compared to the net carrying value of $1.6 billion (including debt premiums and discounts). At June 30, 2012, the fair-value of the variable-rate debt was estimated to be equal to the net carrying value of $478.0 million. We do not believe that the interest rate risk represented by our fixed-rate debt or the risk of changes in the credit spread related to our variable-rate debt was material as of June 30, 2012 in relation to total assets of $4.8 billion and equity market capitalization of $3.1 billion of BioMed Realty Trust, Inc.’s common stock and preferred stock, and BioMed Realty, L.P.’s OP units.
Based on the unhedged outstanding balances of our unsecured line of credit, our Term Loan and our proportionate share of the outstanding balance for the PREI joint ventures’ secured construction loan at June 30, 2012, a 1% change in interest rates would change our interest costs by approximately $3.1 million per year. This amount was determined by considering the impact of hypothetical interest rates on our financial instruments. This analysis does not consider the effect of any change in overall economic activity that could occur in that environment. Further, in the event of a change of the magnitude discussed above, we may take actions to further mitigate our exposure to the change. However, due to the uncertainty of the specific actions that would be taken and their possible effects, this analysis assumes no changes in our financial structure.
In order to modify and manage the interest rate characteristics of our outstanding debt and to limit the effects of interest rate risks on our operations, we may utilize a variety of financial instruments, including interest rate swaps, caps and treasury locks in order to mitigate our interest rate risk on a related financial instrument. The use of these types of instruments to hedge our exposure to changes in interest rates carries additional risks, including counterparty credit risk, the enforceability of hedging contracts and the risk that unanticipated and significant changes in interest rates will cause a significant loss of basis in the contract. To limit counterparty credit risk we will seek to enter into such agreements with major financial institutions with high credit ratings. There can be no assurance that we will be able to adequately protect against the foregoing risks and will ultimately realize an economic benefit that exceeds the related amounts incurred in connection with engaging in such hedging activities. We do not enter into such contracts for speculative or trading purposes.
Equity price risk
 
We have exposure to equity price market risk because of our equity investments in certain publicly traded companies and privately held entities.  We classify investments in publicly traded companies as “available for sale” and, consequently, record them on our condensed consolidated balance sheets at fair value, with unrealized gains or losses reported as a component of accumulated other comprehensive income or loss.  Investments in privately held entities are generally accounted for under the cost method because we do not influence any of the operating or financial policies of the entities in which we invest.  For all investments, we recognize other-than-temporary declines in value against earnings in the same period during which the decline in value was deemed to have occurred.  There is no assurance that future declines in value will not have a material adverse impact on our future results of operations.  A 10% decrease in the fair-value of our equity investments as of June 30, 2012,

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would decrease their fair value by approximately $752,000.
 
Foreign currency exchange rate risk
 
We have exposure to foreign currency exchange rate risk related to our subsidiary operating in the United Kingdom.  The functional currency of our foreign subsidiary is the British pound.  Gains or losses resulting from the translation of our foreign subsidiary's balance sheet and statement of income are included in accumulated other comprehensive income.  Gains or losses will be reflected in our statements of income when there is a sale of our investment in these operations or upon a complete or substantially complete liquidation of the investment.  For both the three and six months ended June 30, 2012, total revenues from properties outside the United States contributed $901,000, which represented less than 1% of our total revenues for both the three and six months ended June 30, 2012. Net investment in properties outside the United States was $205.9 million as of June 30, 2012.


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ITEM 4. CONTROLS AND PROCEDURES

Controls and Procedures (BioMed Realty Trust, Inc.)

BioMed Realty Trust, Inc. maintains disclosure controls and procedures that are designed to ensure that information required to be disclosed in its reports under the Exchange Act is recorded, processed, summarized and reported within the time periods specified in the Securities and Exchange Commission's rules and forms and that such information is accumulated and communicated to its management, including BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer, as appropriate, to allow for timely decisions regarding required disclosure. In designing and evaluating the disclosure controls and procedures, management recognizes that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving the desired control objectives, and management is required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures. Also, BioMed Realty Trust, Inc. has investments in unconsolidated entities. As BioMed Realty Trust, Inc. manages these entities, its disclosure controls and procedures with respect to such entities are essentially consistent with those it maintains with respect to its consolidated entities.
 
As required by Securities and Exchange Commission Rule 13a-15(b) under the Exchange Act, BioMed Realty Trust, Inc. carried out an evaluation, under the supervision and with the participation of its management, including BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and operation of BioMed Realty Trust, Inc.'s disclosure controls and procedures as of the end of the period covered by this report. Based on the foregoing, BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer concluded that BioMed Realty Trust, Inc.'s disclosure controls and procedures were effective at the reasonable assurance level.
 
There has been no change in BioMed Realty Trust, Inc.'s internal control over financial reporting during the quarter ended June 30, 2012 that has materially affected, or is reasonably likely to materially affect, BioMed Realty Trust, Inc.'s internal control over financial reporting.
 
Controls and Procedures (BioMed Realty, L.P.)

BioMed Realty, L.P. maintains disclosure controls and procedures that are designed to ensure that information required to be disclosed in its reports under the Securities Exchange Act of 1934, as amended, or the Exchange Act, is recorded, processed, summarized and reported within the time periods specified in the Securities and Exchange Commission's rules and forms and that such information is accumulated and communicated to its management, including BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer, as appropriate, to allow for timely decisions regarding required disclosure. In designing and evaluating the disclosure controls and procedures, management recognizes that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving the desired control objectives, and management is required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures. Also, BioMed Realty, L.P. has investments in unconsolidated entities. As BioMed Realty, L.P. manages these entities, its disclosure controls and procedures with respect to such entities are essentially consistent with those it maintains with respect to its consolidated entities.
 
As required by Securities and Exchange Commission Rule 13a-15(b) under the Exchange Act, BioMed Realty, L.P. carried out an evaluation, under the supervision and with the participation of its management, including BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and operation of BioMed Realty, L.P.'s disclosure controls and procedures as of the end of the period covered by this report. Based on the foregoing, BioMed Realty Trust, Inc.'s Chief Executive Officer and Chief Financial Officer concluded that BioMed Realty, L.P.'s disclosure controls and procedures were effective at the reasonable assurance level.
 
There has been no change in BioMed Realty, L.P.'s internal control over financial reporting during the quarter ended June 30, 2012 that has materially affected, or is reasonably likely to materially affect, BioMed Realty, L.P.'s internal control over financial reporting.


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PART II - OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS

Although we are involved in legal proceedings arising in the ordinary course of business, we are not currently a party to any legal proceedings nor is any legal proceeding threatened against us that we believe would have a material adverse effect on our financial position, results of operations or liquidity.

ITEM IA. RISK FACTORS

Our annual report on Form 10-K for the year ended December 31, 2011 includes detailed discussions of our risk factors under the heading “Part I, Item 1A. Risk Factors.” Set forth below are certain changes from the risk factors previously disclosed in our annual report on Form 10-K as a result of certain events that occurred during the quarter ended June 30, 2012. You should carefully consider the risk factors discussed in our annual report on Form 10-K, as well as the other information in this report, which could materially harm our business, financial condition, results of operations or growth prospects.

Risks Related to Granta Park Acquisition and International Operations Generally
Our ownership of Granta Park in the United Kingdom and future activities outside the United States may subject us to risks different from and potentially greater than those associated with our domestic operations.
In June 2012, we acquired Granta Park, comprising eleven laboratory and office buildings and a total of approximately 472,200 square feet of space, as well as approximately 138,400 square feet of development and expansion rights, in Cambridge, United Kingdom. The purchase price for the property was £126.8 million, or approximately $196.0 million (based on the exchange rate in effect as of June 8, 2012), excluding transaction costs. In addition to Granta Park, in the future we may underwrite and acquire other properties or interests in real estate related entities in international markets that are new to us. Our international investments, consisting only of Granta Park, constituted 3.9% of our total gross assets as of June 30, 2012.
International development, ownership and operating activities involve risks that are different from and potentially greater than those we face with respect to our domestic properties and operations. These risks include but are not limited to:

our limited knowledge of and relationships with sellers, tenants, contractors, suppliers or other parties in these markets;

challenges in managing and integrating international operations, development and redevelopment, including difficulty in hiring qualified management, sales and construction personnel and service providers in a timely fashion;

changes in foreign political, regulatory and economic conditions, including regionally, nationally and locally;

challenges of complying with a wide variety of foreign laws and regulations, including those relating to real estate, corporate governance, operations, taxes, employment and legal proceedings;

establishing effective controls and procedures to regulate the operations of new offices and to monitor compliance with U.S. laws and regulations such as the Foreign Corrupt Practices Act and similar foreign laws and regulations;

adverse effects of changes in exchange rates for foreign currencies;

challenges with respect to the repatriation of foreign earnings;

differences in lending practices; and

differences in languages, cultures and time zones.

The realization of any of these risks could have an adverse impact on our results of operations and financial condition.

We are subject to risks from potential fluctuations in exchange rates between the U.S. dollar and foreign currencies.

We acquired Granta Park in June 2012, and may acquire additional properties in the United Kingdom or in other countries

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where the U.S. dollar is not the local currency. As a result, we are subject to international currency risk from the potential fluctuations in exchange rates between the U.S. dollar and the local currency. A significant decrease in the value of the British pound or other currencies in countries where we may have an investment could materially affect our results of operations. We may attempt to mitigate such effects by borrowing in the local foreign currency in which we invest and, under certain circumstances, by hedging exchange rate fluctuations; however, access to capital may be more restricted, or unavailable on favorable terms or at all, in certain locations, and we cannot assure you that our efforts will successfully neutralize all international currency risks. In addition, any international currency gain recognized with respect to changes in exchange rates may not qualify under the 75% gross income test or the 95% gross income test that we must satisfy annually in order to qualify and maintain our status as a REIT.

Risks Related to Our Investments in Loans
We face risks associated with our investment in a construction loan secured by a property under development and future investments in loans, including a failure of an underlying property to perform to expectations and potential principal losses on our investment.

In May 2012, we purchased a $255 million interest in a $355 million construction loan (the Construction Loan) secured by first priority mortgages in the properties owned and under development by the borrower located in Boston, Massachusetts, and may make similar investments in the future. We expect to fund the full balance of the Construction Loan in monthly draws starting in the fourth quarter 2012 and ending in the first quarter of 2014. We face risks associated with our investment in the Construction Loan and other similar investments that we may undertake in the future, including the following:

A loan may become non-performing or sub-performing for a variety of reasons outside of our control, including, without limitation, because the underlying property is too highly leveraged, the borrower falls upon financial distress or the property fails to perform as expected, resulting in the borrower being unable to meet its debt service obligations to us.

A non-performing or sub-performing loan may require a substantial amount of workout negotiations and/or restructuring, which may divert the attention of our management from other activities and entail, among other things, a substantial reduction in the interest rate, capitalization of interest payments and a substantial write-down of the principal of the loan.

If we find it necessary or desirable to foreclose on one or more loans we acquire, the foreclosure process may be lengthy and expensive, with an uncertain outcome, and the underlying property's value may deteriorate as a result.

As is the case with our investment in the Construction Loan, we may co-invest in mortgage loans with other investors. As a result, we may lack sole decision-making authority, rely on co-investors' financial condition and/or have disputes between us and other co-investors. In addition, such co-investors may become bankrupt or fail to fund their share of required capital contributions, have economic or other business interests or goals that are inconsistent with our business interests or goals, or take actions contrary to our policies or objectives.

The realization of any of these risks could have an adverse impact on our results of operations and financial condition.

ITEM 2. UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS

During the three months ended June 30, 2012, our Parent Company issued, net of forfeitures, an aggregate of 6,655 shares of its common stock in connection with restricted stock awards under its incentive award plan for no cash consideration. For each share of common stock issued by our Parent Company in connection with such an award, the operating partnership issued a restricted operating partnership unit to our Parent Company, in reliance on the exemption from registration provided by Section 4(2) of the Securities Act of 1933, as amended. During the three months ended June 30, 2012, the operating partnership issued an aggregate of 6,655 restricted operating partnership units to our Parent Company, as required by the operating partnership's partnership agreement.

ITEM 3. DEFAULTS UPON SENIOR SECURITIES

None.

ITEM 4. MINE SAFETY DISCLOSURES


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Not applicable.

ITEM 5. OTHER INFORMATION

None.

ITEM 6. EXHIBITS

Exhibit
Number
 
Description of Exhibit
4.1
 
Supplemental Indenture No. 2, dated June 28, 2012, by and among BioMed Realty, L.P., BioMed Realty Trust, Inc. and U.S. Bank National Association, as trustee, including the form of 4.25% Senior Notes due 2022 and guarantee thereof.(1)
10.1
 
Unsecured Term Credit Agreement, dated as of March 30, 2012, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(2)
10.2
 
Form of Term Note under Unsecured Term Credit Agreement.(2)
10.3
 
First Amendment to Unsecured Credit Agreement, dated as of March 30, 2012, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(2)
31.1
 
Certifications of Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
31.2
 
Certifications of Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
32.1
 
Certifications of Chief Executive Officer and Chief Financial Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
101.INS
 
XBRL Instance Document.†
101.SCH
 
XBRL Taxonomy Extension Schema Document.†
101.CAL
 
XBRL Taxonomy Extension Calculation Linkbase Document.†
101.DEF
 
XBRL Taxonomy Extension Definition Linkbase Document.†
101.LAB
 
XBRL Taxonomy Extension Label Linkbase Document.†
101.PRE
 
XBRL Taxonomy Extension Presentation Linkbase Document.†
____________
(1)
Incorporated herein by reference to BioMed Realty Trust, Inc.'s and BioMed Realty, L.P.'s Current Report on Form 8-K filed with the Securities and Exchange Commission on June 28, 2012.

(2)
Incorporated herein by reference to BioMed Realty Trust, Inc.'s and BioMed Realty, L.P.'s Current Report on Form 8-K filed with the Securities and Exchange Commission on April 5, 2012.

Pursuant to Rule 406T of Regulation S-T, these interactive data files are deemed not filed or part of a registration statement or prospectus for purposes of Section 11 or 12 of the Securities Act, are deemed not filed for purposes of Section 18 of the Exchange Act, and otherwise are not subject to liability under these sections.



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SIGNATURES
Pursuant to the requirements of the Securities Exchange Act of 1934, the registrants have duly caused this report to be signed on their behalf by the undersigned, thereunto duly authorized.

BIOMED REALTY TRUST, INC.
 
BIOMED REALTY, L.P.
 
 
 
By: BioMed Realty Trust, Inc.
 
 
 
Its general partner
 
 
 
 
 
/s/ ALAN D. GOLD
 
/s/ ALAN D. GOLD
Alan D. Gold
 
Alan D. Gold
Chairman of the Board and
 
Chairman of the Board and
Chief Executive Officer
 
Chief Executive Officer
(Principal Executive Officer)
 
(Principal Executive Officer)
 
 
 
 
 
/s/ GREG N. LUBUSHKIN
 
/s/ GREG N. LUBUSHKIN
Greg N. Lubushkin
 
Greg N. Lubushkin
Chief Financial Officer
 
Chief Financial Officer
(Principal Financial Officer)
 
(Principal Financial Officer)
 
 
 
 
 
Dated:
August 2, 2012
 
Dated:
August 2, 2012


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EXHIBIT INDEX

Exhibit
Number
 
Description of Exhibit
4.1
 
Supplemental Indenture No. 2, dated June 28, 2012, by and among BioMed Realty, L.P., BioMed Realty Trust, Inc. and U.S. Bank National Association, as trustee, including the form of 4.25% Senior Notes due 2022 and guarantee thereof.(1)
10.1
 
Unsecured Term Credit Agreement, dated as of March 30, 2012, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(2)
10.2
 
Form of Term Note under Unsecured Term Credit Agreement.(2)
10.3
 
First Amendment to Unsecured Credit Agreement, dated as of March 30, 2012, by and among BioMed Realty, L.P., KeyBank National Association, as Administrative Agent, and certain lenders party thereto.(2)
31.1
 
Certifications of Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
31.2
 
Certifications of Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
32.1
 
Certifications of Chief Executive Officer and Chief Financial Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
101.INS
 
XBRL Instance Document.†
101.SCH
 
XBRL Taxonomy Extension Schema Document.†
101.CAL
 
XBRL Taxonomy Extension Calculation Linkbase Document.†
101.DEF
 
XBRL Taxonomy Extension Definition Linkbase Document.†
101.LAB
 
XBRL Taxonomy Extension Label Linkbase Document.†
101.PRE
 
XBRL Taxonomy Extension Presentation Linkbase Document.†
____________
(1)
Incorporated herein by reference to BioMed Realty Trust, Inc.'s and BioMed Realty, L.P.'s Current Report on Form 8-K filed with the Securities and Exchange Commission on June 28, 2012.

(2)
Incorporated herein by reference to BioMed Realty Trust, Inc.'s and BioMed Realty, L.P.'s Current Report on Form 8-K filed with the Securities and Exchange Commission on April 5, 2012.

Pursuant to Rule 406T of Regulation S-T, these interactive data files are deemed not filed or part of a registration statement or prospectus for purposes of Section 11 or 12 of the Securities Act, are deemed not filed for purposes of Section 18 of the Exchange Act, and otherwise are not subject to liability under these sections.



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